BtaINT0001316 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E583]
Coordinates
chr7:45528280-45529249:-
Coord C1 exon
chr7:45529178-45529249
Coord A exon
chr7:45528831-45529177
Coord C2 exon
chr7:45528280-45528830
Length
347 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
CAGCATGGTCCCACCCACAGTGT
3' ss Score
5.43
Exon sequences
Seq C1 exon
AGCCCTGTCCACCCTGCCCTGACACCCGCGGTCGTGCCCACCGGTTACTCCACTATTGCGGCAGTGACTTCG
Seq A exon
GTGAGAGGTCCCTGACCCCATCCCTCACCTGGCCCCCAATTGACCTGAACTTGACCCCTGTCTTGCTGACCTGTAACTCTGGTCCAACTTTACCCTTCACTCCTTGACCTGACTACAACTTGACCCGTTGTGACCCTAATTTTGACTCCCTGATCTGATCCTTTGCCCTAATCTGACTCCTGACCCCTCATTGATCCCTAAGCTGATCTTGACCCCAGGCCACAGCTGACCACAGTCCCCAAGAGCCTCCATTGCCCCACCTGACCCCCAGTTCTGTCGTCTTGCAATGGGTGCATGGTTGGGACCCAGACCCTGTCCAGCAGGGCTCAGCATGGTCCCACCCACAG
Seq C2 exon
TGTTCCGGGCCCGTGTGCTGGGCCGCGTCCGCCAGGCTCAGGAGACTCGCTATGAGGTGCATGTGCAGCTCATCTACAAGAATCGCTCTCCACTTCGGGCCCTGGAGTACGTGTGGGCGCCAAGCCGCTGCCCTTGCCCCCCGCTGGCCCTCCATCGGGACTACTTGCTGGCTGCGCGGCGCCTCATCAGCCCTGATGGCACCCAGGACCGGCTGCTGCTCCCCCATGCTGGCTACGCTCGGCTCTGGAGCCCTGCCGAGGACAGCCGAGTGCGCCTGGCTGCCCGGCACTGCCCTCTCTGAGCCCCCGGACTAGACCTTGGCCACACATGGGTGACTAGTCTTAAAGTCAGCATATGTCTCCTCTTGCCATAGTTTCCAGGGAGCTAGGCACTGTTTGTCTTCCACCTGCAGCTCTATGACTCTCCCATCATCACACTCAGACACCTCTACATTCAGAGCCGCTCTCACTAGCAGGCCCACACGGGTGGGGACTCACTGAACAGACTTTTAATTCTGGTTTCCTCTCTCACCTTGGCTGCCAGGAAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006662:ENSBTAT00000008750:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.7=32.0)
A:
NA
C2:
PF0175916=NTR=PD(91.3=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATTGCGGCAGTGACTTCG
R:
CCATGTGTGGCCAAGGTCTAG
Band lengths:
353-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]