HsaINT0004366 @ hg19
Intron Retention
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:27912]
Coordinates
chr19:1505017-1506660:-
Coord C1 exon
chr19:1506589-1506660
Coord A exon
chr19:1506316-1506588
Coord C2 exon
chr19:1505017-1506315
Length
273 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
TTAGCACGTCCCCTCAACAGTGT
3' ss Score
5.28
Exon sequences
Seq C1 exon
ACCCCTGCCCACCCTGCCCTGACACCCGCGGCCGCGCCCACCGACTACTCCACTATTGCGGCAGTGACTTTG
Seq A exon
GTGAGACCCCCGACCTCTACCCTGACTTAGCCCCTACTAACCTGGCCTCCTCCTGACCTCTGACCCTAATCTGACTTTACCCTTGACCCCTTCTTCTGATCCTAATTTGCCTCTTGACCCTAATCCCTCATTGATCCCTGACGTGATCCTGACTCTAGTCCCTATAGATCCCGAGGTCCCACCTGACCCTCAGTCCCTCTTCTGGCAAGGGAGGGGGCGTAGAGATTTGCGCAGAGTTGAGCAGCCAGCCAGCTTAGCACGTCCCCTCAACAG
Seq C2 exon
TGTTCCAGGCCCGAGTGCTGGGCCACCACCACCAGGCCCAGGAGACCCGCTATGAGGTGCGCATCCAGCTCGTCTACAAGAACCGCTCGCCACTGCGGGCACGCGAGTACGTGTGGGCGCCAGGCCACTGCCCCTGCCCGATGCTGGCACCCCACCGGGACTACCTGATGGCTGTCCAGCGTCTTGTCAGCCCCGACGGCACACAGGACCAGCTGCTGCTGCCCCACGCCGGCTACGCCCGGCCCTGGAGCCCTGCGGAGGACAGCCGCATACGCCTGACTGCCCGGCGCTGTCCTGGCTGAGCCCCTGCAGGAGCCCCGGCCACACACAGCAAGAAAGATACATCTGACCAGCCTCAACGTCAACGTATTTCCCCTCTCACCCTGGCTTCCAGGCAGCTCTGAAATACGTCCCACCTGTGCAGCTATGTGACTCCCTCCCACACACGCTTAAGACACCTCTGCATGCAGTCAAAGCCACTGTCACAAGCCGGCAGGCACTGGTGAGGAGGCACTAAGGAGACTCTGACTTTTATTTCGCCTCTCTCCTTGGCTGCCAGGAAGCTCATAGCTATTTATACTCAGAAAGTTTAACGCTGCTTTCTTTCTCTTTGCGCGCGTCACACTTGCTTGGAGACACTGTCATGAACGAGCATGACACCCTGCTGCCCTGGGTACCCAGAAGATCATCTGTTTACTTCCCAGACACTGTGCTGTCTCTGCTCTCTGCTACTCACACACACCCTCATGTGTGAAGGGCAGAGACACTGTCACAAACAGGCATGCCCCTTAGAAGACATGCCTAACCAGGCACTGTAACGTACCAACGTACCAATTTCCCCTTTTCCCCTGGCTACCAGGAAACTCGGAGACAATCTTTTCAGCCTCAGCATTTCTGGCTGGATTTCCACCCATCAACACGTGCTTGCTCCTCCTTTTTTTTTTTTTCTGAGGTAGACCCTTGCTCTGTCACCTAGGCTGAAGTGCGGTGGTGCAATCATGGCTCACTGCAGCCTCAAATTCCTGGGCTCAAGCGATCCTCCCACCTCAGCCTCCACAGCAGCTGGAACTCCAGGTGTGAATCACCATGCCCGGCTAACTTTTAAATTTTTTGTAGAGATGGGGTCTTGCTACGTTGCCCACACTGCTCTCCAACTACTGGCCTCAAACGATCCTCCTGCCTCGGCCTCCCAAAGCACTGGAATTTCAGGCATGCACTATCGTACTGGCTGTTCACCCCCCTTTTATTCCTCTTTAATTTTTACAAGCACTTTTTAAAAAAAAATTTTACTTTAAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761-ADAMTSL5:NM_213604:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.7=32.0)
A:
NA
C2:
PF0175916=NTR=PD(91.3=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTATTGCGGCAGTGACTT
R:
GCGTATGCGGCTGTCCTC
Band lengths:
298-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)