GgaINT0145660 @ galGal3
Intron Retention
Gene
ENSGALG00000024298 | ADAMTSL5
Description
NA
Coordinates
chr28:2567386-2567855:-
Coord C1 exon
chr28:2567784-2567855
Coord A exon
chr28:2567685-2567783
Coord C2 exon
chr28:2567386-2567684
Length
99 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
ACCCCACTCCCACCCTGCAGTGT
3' ss Score
8.24
Exon sequences
Seq C1 exon
GGCGATGCGGGCGGTGCCACCCACCCAAGGGGCGCTCTCAGCGCATCCGGCACTTCTGCCAGAGTGACTTCG
Seq A exon
GTGAGCAGCGGTGGGTGGGGGGCAGGGCGGGGGGGGGGGAGGGGGGGAGCAACACCCAACGTGATGCCCCGCTCAGTGCACCCCACTCCCACCCTGCAG
Seq C2 exon
TGTTCCGAGCACGGATCCTGGCGCGGCGCTCGGTGGGGCAGGAGATGCGCTACGAGGTGCAGGTGGTGACACCGTACCGGCACCGCTTCCCCATGGTACCACGGGAGTACGTCTGGGTGCCCGACACGTGCGGCTGCCCCACGCTGCTGGGGGGCCACGACTACGTGCTGATGGCACGGCGCCACGTCAACTACGAGCACACGCTGAACCGCATCCTGCTGCAACGAGACGGGTACGCACGGCCCTGGTCACCCCGCGAGGAGCGCGCGGTGCGGGACGCGGGACGGCACTGTGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298:ENSGALT00000041053:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.7=32.0)
A:
NA
C2:
PF0175916=NTR=PD(91.3=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGGGGCGCTCTCAG
R:
ACCCAGACGTACTCCCGTG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]