MmuINT0011586 @ mm9
Intron Retention
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:79803461-79804405:-
Coord C1 exon
chr10:79804334-79804405
Coord A exon
chr10:79804202-79804333
Coord C2 exon
chr10:79803461-79804201
Length
132 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
TCTGTGTCCCTGTCGTACAGTGT
3' ss Score
7.13
Exon sequences
Seq C1 exon
ACCCCTGCGGGCCATGCCCCGACAGCCGTGGTCGCGCACACCGGCTTCTTCACTACTGTGGCAGCGACTTTG
Seq A exon
GTGAGACTCTTGACCTTTGACCCCTTCCACTGACCCAAGTGACCCTGGATAGTTGCTTGATCCTCACCCTTGATCTCAGCTGACGCAAAGGCACTGAGGGCCCATATGACCCTCTGTGTCCCTGTCGTACAG
Seq C2 exon
TGTTCCAGGCCCGTGTGCTGGGCCGCCACCGCCAGGCCCAGGAGACCCGCTACGAAGTGCGGGTCTTGCTCATCTACAAAAGCCGCACGCCTCTGCGTACTCGAGAATATGTATGGGCACCAGGCCACTGTCCGTGCCCACCACTGGCCCCACACCGAGAATACCTGTTGGCTGCCAGGCGACTCGTAAGCCCTGATGGCACGCAGGATCGGCTACTGCTGCCTCACGCTGGCTATGCTCGACTCTGGAGTCCCGCGGAGGACAGCAGAGTTCGGCTGGCTGCCCGGCGCTGTCCAGTCTAAACCCCTGGAGGTTGGATCCTCAGCAGGGCTCCTGTTCTGGCGTCCCATGACTCAGGAAAACCTCCCACCTGGAAGCTCATATATTTTAACCAGGGTCTCCCTGACTGGCCTGGAACTCTGTGTAGACCAGGCTAACCTTGAAGTTATGGTAATCCACCTGCCTCTGTCTCTGCAGTGAGTGCTGGGATTAAAGGTGCACTCCATATCTGAGAACTTTAAGGAGCTTCAAGATCCTGGGCTACTTTTCCGCGAAACAACTTTCTGTTCATCTCTTTTCAAGTTACTATTTAATTTTTACAAGAACGTGGAAAAAGAACAAATCCCTCGCCCCTCACTTCCTGAGCTATAGGGACTCCAGGACACCCTAGAAGAGTGGCAGGCATTGTGCACAGACACACCCCCATTCCCATCTTTTCCTAATCTGCCCGGACACCCAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-Adamtsl5:NM_001113548:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.7=32.0)
A:
NA
C2:
PF0175916=NTR=PD(91.3=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTGTGGCAGCGACTTTG
R:
TGAGGCAGCAGTAGCCGATC
Band lengths:
247-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: