HsaEX0004366 @ hg19
Exon Skipping
Gene
ENSG00000180071 | ANKRD18A
Description
ankyrin repeat domain 18A [Source:HGNC Symbol;Acc:23643]
Coordinates
chr9:38571363-38575695:-
Coord C1 exon
chr9:38575473-38575695
Coord A exon
chr9:38573081-38573126
Coord C2 exon
chr9:38571363-38572056
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTATTATTTACTTATTTTAGATG
3' ss Score
8.57
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATCGGATAAGAAAATAGCAGTGATCAGCACCAAGCTCTTTACGGAGAAACAGCGGATGAAATATTTTCTCAGCACTCTTCCTACAAGGCCAGAACCAGAGTTACCTTGTGTTGAAAATCTTAATAGTATAGAACTCAACAGAAAATATATTCCCAAAACGGCCATAAGAATTCCTACTTCAAACCCACAGACTTCAAATAACTGCAAGAACTTCTTGACTGAG
Seq A exon
ATGGAGCTGGACCGTGTAGAACAAATAATTACAGGAACAAAGAAAA
Seq C2 exon
GTTTTGCTATGTTGAGCACTTGCTCCCGTCTACTTTCTTTTGTAGAATCCACTGGTAAGCCACATCTAATGAAGAGATTAACCATAAAATCTTAAGGAAAAGTTGTATGATTTAAAAGATCATAAAACTTTATTACTGGGCTATTTACATGAAATTTTAATTGTTTCTCATATAATATAAAACATCATAATCTTTACTAAAGTAGAATATTTTCATGTCACATATGGTGTATATTTATATGTTATTTTAAATGATGTTTTTTAGCCTCCTTAAGTTTTAAGTGGATCTTGCAAATGAACACCAGCGTTATTGAGTTTGGCCTACTCAAATTGCCTGAATGTCAGCTGTTTAAACAGCCAAACAACCAAGTCATCATTGATACTTTAGTAAAGGTCATCGAGGGCTTCTTTGCATTTTACAGTTTTTATTACCATATGTAGTAGGAGACTTAAAGAGTATCTGCCAGGTTTGTCCATACTAGTGTTACGGTTTTCTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180071_MULTIEX3-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(52.3=76.0),PF0246513=FliD_N=PD(28.2=26.7),PF0021313=OSCP=PD(42.9=40.0),PF139491=ALIX_LYPXL_bnd=FE(53.2=100)
A:
PF139491=ALIX_LYPXL_bnd=PD(8.4=62.5)
C2:
PF139491=ALIX_LYPXL_bnd=PD(4.3=31.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAACGGCCATAAGAATTCC
R:
TGGCTTACCAGTGGATTCTACA
Band lengths:
134-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)