MmuEX1012822 @ mm10
Exon Skipping
Gene
ENSMUSG00000109113 | Gm32916
Description
predicted gene, 32916 [Source:MGI Symbol;Acc:MGI:5592075]
Coordinates
chr7:120611600-120629769:+
Coord C1 exon
chr7:120611600-120622117
Coord A exon
chr7:120628206-120628251
Coord C2 exon
chr7:120629644-120629769
Length
46 bp
Sequences
Splice sites
3' ss Seq
TATAAAATCTGATATTTCAGAAG
3' ss Score
4.56
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGGCATGATCAGTTTTATTAAGTGGGGCGCTTCTAGAAGCCACCCATCATTGGCAGGCACCATCTCTCTCCTACTCTGAACTACTAGTTAGCTTAGAAATAGATGTAATTCTTCACCATAAATTTAGACCTATACCTGAGAGCCAACAGTATGCTCCAAGGCGTTTTCAGCGTTAAGGCTTTGGGTAAGAGGGATTATGAAATGCTTTCTAAAGAGCGGCTCATTTAGGGAATGAGGGCGTTAAGTATTTACCATTTGCAATCTTCACAGAACTAATAACAAACTAAGCAAAGTCAGAACAGACATTTTGCTGGTGACAGAACGGAACAGAACTGTACAGAACACTCTTACTACAAGGCCTGTCCCCAAAAGTCCTGGTGTCACGAAGCATGATACTTATATAAACCGCAACCCTAACTTCATCGCAAGCAGAAACTCAGAGCCTGCCATACCCAGCCCTCAGCCTTCTCCTGAGCTTATGGGGAGGAGTCTATTCAAG
Seq A exon
AAGCAGCAAAAAATGGTAAAAGACATAACTGAAGAGGTAGATAAAG
Seq C2 exon
CTGCAGCTGAACTTGAGTCTTGGTCCTTGGAAGCTTATCCTTCAGGATCTAAGTAACAAATCAAGATCTATTTTAGGGAATAGCAAAGACGTGCACAGATTAAAATAAACATGTTTTTCCGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109113-'14-16,'14-15,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTCCTGAGCTTATGGG
R:
TGCACGTCTTTGCTATTCCCT
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types