DreEX6100475 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3447361-3453842:-
Coord C1 exon
chr25:3453593-3453842
Coord A exon
chr25:3449793-3449838
Coord C2 exon
chr25:3447361-3448136
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTGTCTCTGTTGCAGATG
3' ss Score
13.17
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTCGAATGAGCGTCTAGCGGAGGCGAACACTAAACTCCTGAGCGAGCGGCAGCGCAGTAAGTCTCTGCTCAGCGGCAGCTTCATGAACGCAGGGTTAGCGGCTCCAGCTCTGGATGTGTCGTCTCTGGGCTCCGTCGGGGCCTACGGTGCGTCTCTGGGGCCCCTGAACCGCAGCCTGGGCCTCGGGACGCCTCTGCTGGGCACGCTGGGAGAATCACAGAGCAGCCGCGTGGAGGCATACCTGGCCAAG
Seq A exon
ATGCAGACCGAGCTGGAGAAGAATATATCGAAGGAGCTGGACTGTG
Seq C2 exon
TGTCAGGGGATCTGAACGGAGGCTCAGCCCGCATGTCCCCTGTAGGATCAGCCTCCGGTTCCCAAAACCTGAACGTGACCCTGGAGCAGACGGACCCTGTGAGCAGAGCCACACAGCAGTATCTGGAGGTGCTCAAGAAAAACTACATGATCTGACACACACACACACCACTGCTAAAACACACATTGAGCACGCATTCTGTCATCATATTACAATGTGTTCATACCTCCACTATTATTCCTGCCGCTCAGGAACTTTGCATTTGTACTTTTCTGACTGTGGAAAAATAAGGCCATGTGTTTTTGTGCATAAGTGCTACAGAAACAGCCATCACAAGGGCCAAATCCAACACTGCAATCAGTTTTTGCGATCTTGAATGTCGACAAAGCACTTCTGCAGTGCCTCAGGAGTACATGAAGGTACAAGTGCTGCTTTATTCTCGTTTATCATATGTGGCTTTAGTTGACTGTATATATTTGGCCAGTTTTTGTAGGCGATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768-'54-52,'54-51,56-52=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.000 C2=0.388
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(42.3=52.4)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000171863fB33
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGCTGGGAGAATCAC
R:
AGGGTCACGTTCAGGTTTTGG
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]