BtaEX0003520 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17907250-17911142:-
Coord C1 exon
chr13:17910914-17911142
Coord A exon
chr13:17908496-17908541
Coord C2 exon
chr13:17907250-17907374
Length
46 bp
Sequences
Splice sites
3' ss Seq
TAATATTTGACTTATTTCAGATG
3' ss Score
7.27
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GACTCATGAGAGGCTGGCGGTGATCAGCACCAAACTTGAGGTGGAGAAAGAGCAGAACAGATCTTTACTCAGCACTCTTAGCACGAGGCCAGTCCTGGAGCCCCCTTGTGTTGGAAATTTCAATAATCCTGTAGTGCTCAATGGAAATCTTACTCCAAGAGCAAACGTAGGTTTTTCTACCTCAATTCCACGCCCTTCGAATAACAGCATGGAGACTTACTTGACCAAG
Seq A exon
ATGCGGCAGGAGTTGGACAGGAGTATAACTAGAGAACTAAGAGAAG
Seq C2 exon
CTGCTGCTGAATTTGAATCTGAGTCCTATGGATTGTCTCCTCTAGGAGCTACAGATGGGTCAAATCTGTCTGAGGACCTGCTTTTGAAAACATCACAAGAATATGTACAGATTTTGAAGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'38-39,'38-37,39-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=0.219 C2=0.143
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(51.8=75.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCTCAATTCCACGCCCT
R:
GGTCCTCAGACAGATTTGACCC
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development