MmuEX6006498 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118501308-118506604:-
Coord C1 exon
chr6:118506376-118506604
Coord A exon
chr6:118505726-118505771
Coord C2 exon
chr6:118501308-118503156
Length
46 bp
Sequences
Splice sites
3' ss Seq
AAATATTCATCTCATTTCAGATG
3' ss Score
7.29
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GACCAGTGAGAAGCTGGAGGAGGCCAGCAGCAAGCTGCTCCTGGAGGAGCAGCAGAACAGGTCCTTGCTGAGCACTCTGAGTACAAGGCCTGTTGTGGAGTGTCCTTGTGTTGGAAGTTTCCATAATAGTTTGGTATTCAACAGAACTCTTATTCCAAGAGAAAACATAGTGGTTCCTACTTCAGGCCTACAGCCATCAAATAAGAGAGTGGAGATCTACCTGACCAAG
Seq A exon
ATGCATCAAGAGTTGGAAAAAAGTATAAATAGAGAACTTAAAGAAG
Seq C2 exon
CTACTGCTGAACTTGAATCTGAGTTCTGCAGAGTTTCTCCCCTGGGATCTGCTACTAAAGCAAGCCAAGATCAACTCTCAGACGCATCGCAAGAATTTATAGACATTCTAAAGAAAAAATATATGATCTGCTGAATTTAAAAAGAGAAAAAGGAAGAAAAAGTAGAAGTGGGACTTTTTGGGAGAGAGGATCAGAGAAGTTAAAGGGGCACGTGCTGTGTGTCTGAAATGTCTCCGTGGCCTGGGTGTGGTGGCACGTGTCTTTGACTCCAGCACTTGGGAAGCAGAGGCTGGTAGATCTCTGAATTCAAGGGCAGTCAGAGCTACATGTCTCATACTGAAAAATAAAGTCATAATGGAACCTACTATTTTGTACAAATAATACACATTAATATACATGATCTAAAATATAACATTTTGGGCTGGAAAGGTGCCTCAGGAGTTTGAGAGCACTGGCAGCTCTTCCCTAGGTCCTGAATTCAGTTCCCAGCATCCATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'43-49,'43-48,44-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.062 C2=0.045
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(52.3=75.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTACTTCAGGCCTACAGC
R:
GCGATGCGTCTGAGAGTTGAT
Band lengths:
147-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types