HsaEX6087935 @ hg38
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27005623-27013110:-
Coord C1 exon
chr10:27012882-27013110
Coord A exon
chr10:27006917-27006962
Coord C2 exon
chr10:27005623-27005723
Length
46 bp
Sequences
Splice sites
3' ss Seq
TAACATTTGACTTTTTTCAGATG
3' ss Score
8.66
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AACTAATGAGAGGCTAGCAGAGGTCAACACCAAACTTCTTGTGGAAAAACAGCAGAGCAGATCTTTGTTCACCACTCTCACTACCAGGCCAGTCATGGAGCCACCTTGTGTGGGAAATCTTAATAATAGTTTAGATCTCAACAGAAAACTTATTCCAAGAGAAAACTTAGTGATCTCTACCTCAAATCCACGGGCTTCAAATAATAGCATGGAGAACTACTTGAGCAAG
Seq A exon
ATGCAGCAGGAGTTGGAAAAAAATATAACTAGAGAACTCAAAGAAG
Seq C2 exon
CTGCTGCTGAATTGGAATCTGGATCAATAGCTTCCCCTCTAGGGTCTACTGATGAGTCAAATCTAAATCAAGATCTAGTTTGGAAAGCATCAAGAGAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'68-81,'68-78,70-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=0.537 C2=0.494
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(51.8=75.3),PF119023=DUF3422=PD(37.5=39.0)
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000376087fB9368
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAAATCCACGGGCTTCAA
R:
TCTCTTGATGCTTTCCAAACTAGA
Band lengths:
147-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains