GgaEX0013384 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24106537-24111623:+
Coord C1 exon
chr1:24106537-24106783
Coord A exon
chr1:24109034-24109079
Coord C2 exon
chr1:24111475-24111623
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTGTTATGTATAATTCTAGATA
3' ss Score
7.03
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGCCAATGAGAGACTAGCAGAAGCCAATGCTAAGCTCCTTCAGGAGCGCCACAGAAGCAAATCTTTAATTGCAAGTAGCATTGTCACTGGAGGTCTGTCTGCAAGTCCAGTTCTGTATTCAACTGAACTGGGACATCTTGGCAACAATTTGGCACTGAACAGAAGTCTCAGCCTAGGAGGAAGCTTCCTAGGCACAGCTGGGAATGCGTTATCATCAAGAAACAAGGTTGAAGCCTACATGGCTAAG
Seq A exon
ATACGGAAGGAACTGGATGAAAAAATCACTAAAGAACTTGAACAAG
Seq C2 exon
CCACTGCTGAACTTGAAACTGGATCTGCTGGAGCTTCTCCAATGGTATCTACTGATGGATCTTCAAGAAATCTCAATGTTGACCAGGATCCCCTTTGCAGAGCAATACAGGAGTACCGTGATGTTTTAACCAAAAATTATCTGATCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGAACAGAAGTCTCAGCC
R:
AGAAGCTCCAGCAGATCCAGT
Band lengths:
134-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]