RnoEX6014807 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150547467-150551040:-
Coord C1 exon
chr4:150550812-150551040
Coord A exon
chr4:150550152-150550197
Coord C2 exon
chr4:150547467-150549161
Length
46 bp
Sequences
Splice sites
3' ss Seq
AAATATTCATCTCGTTTCAGATG
3' ss Score
7.7
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GACTACTGAGAGGCTGGAGGAGACCAGCACCAAGCTGCTCCTGGAGGAGCAGCAGAACAGGTCTCTGCTGAGCTCTCTCAGTACGAGGCCTGTTGTAGAGTGTCCCTGTGTTGGAAAGCTTCATAATAGTTTGGTATTAAACAGAACTCTTATTCCAAGAGAAAGCCTAGCGGTTCCTACCTCAGGCCTACAGCCATCAAATAAAAGAGTGGAGATCTTCCTGACCAAG
Seq A exon
ATGCATCAAGAGTTGGAAAAAAGTATAAATAGAGAACTTAAAGAAG
Seq C2 exon
CCACTGCTGAACTTGAATCTGAGTTCTGCAGAGTTTCTCCCCTCGGGTCTGCTACCAAACCCGGCCAAGATCTACTCTCAGAAGCATCGCAAGAATATATAGACATTTTAAAGAAAAAATACATGATCTGCTGAATGTAAAAAGAGAAAAAGGAAGAAAAGGCATGAGGTGGAAGTGGACCGTTTGGGAGGAGGACCACAGAAGATAAAGGGCATGCGCCATGTGTGTCCGAAATGTCTCAACGCCCTGGCTGTGGTGGCACGTGTCTTCCACTCCAGCACTTGGGAAGCAGAGGCAGGTAGATCTCTGAATTCAAGGACAGTCAGGGCTACATGTCTTACACAGAAAAATAAAGTCATAATGAACCAACTATCTTATACAAATAATACAAGTTAATATATGTGATCTAAAATATAACATTGTGGGCTGGAGAGATGGCTCAGTGGTCAAGAGCTCCTATGGCTCGTCCATAAGTCCTGAGTTCAATTCTCAGCAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'46-45,'46-44,47-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.188 C2=0.068
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(52.3=75.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTACCTCAGGCCTACAGC
R:
TGAGAGTAGATCTTGGCCGGG
Band lengths:
136-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]