HsaEX6087935 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27294552-27302039:-
Coord C1 exon
chr10:27301811-27302039
Coord A exon
chr10:27295846-27295891
Coord C2 exon
chr10:27294552-27294652
Length
46 bp
Sequences
Splice sites
3' ss Seq
TAACATTTGACTTTTTTCAGATG
3' ss Score
8.66
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AACTAATGAGAGGCTAGCAGAGGTCAACACCAAACTTCTTGTGGAAAAACAGCAGAGCAGATCTTTGTTCACCACTCTCACTACCAGGCCAGTCATGGAGCCACCTTGTGTGGGAAATCTTAATAATAGTTTAGATCTCAACAGAAAACTTATTCCAAGAGAAAACTTAGTGATCTCTACCTCAAATCCACGGGCTTCAAATAATAGCATGGAGAACTACTTGAGCAAG
Seq A exon
ATGCAGCAGGAGTTGGAAAAAAATATAACTAGAGAACTCAAAGAAG
Seq C2 exon
CTGCTGCTGAATTGGAATCTGGATCAATAGCTTCCCCTCTAGGGTCTACTGATGAGTCAAATCTAAATCAAGATCTAGTTTGGAAAGCATCAAGAGAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'44-47,'44-46,45-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=0.602 C2=0.588
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(51.8=75.3),PF119023=DUF3422=PD(37.5=39.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAAATCCACGGGCTTCAA
R:
TCTCTTGATGCTTTCCAAACTAGA
Band lengths:
147-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)