GgaEX0013384 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:26133002-26138404:+
Coord C1 exon
chr1:26133002-26133248
Coord A exon
chr1:26135499-26135544
Coord C2 exon
chr1:26137940-26138404
Length
46 bp
Sequences
Splice sites
3' ss Seq
TGTGTTATGTATAATTCTAGATA
3' ss Score
7.03
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGCCAATGAGAGACTAGCAGAAGCCAATGCTAAGCTCCTTCAGGAGCGCCACAGAAGCAAATCTTTAATTGCAAGTAGCATTGTCACTGGAGGTCTGTCTGCAAGTCCAGTTCTGTATTCAACTGAACTGGGACATCTTGGCAACAATTTGGCACTGAACAGAAGTCTCAGCCTAGGAGGAAGCTTCCTAGGCACAGCTGGGAATGCGTTATCATCAAGAAACAAGGTTGAAGCCTACATGGCTAAG
Seq A exon
ATACGGAAGGAACTGGATGAAAAAATCACTAAAGAACTTGAACAAG
Seq C2 exon
CCACTGCTGAACTTGAAACTGGATCTGCTGGAGCTTCTCCAATGGTATCTACTGATGGATCTTCAAGAAATCTCAATGTTGACCAGGATCCCCTTTGCAGAGCAATACAGGAGTACCGTGATGTTTTAACCAAAAATTATCTGATCTAAACAAAAATTCAAAGGGAGAAGTACTGGAAATCATTTTGTTTACATAGGATGTCTATGATTTCCCATCCTGCAGCTTAGATGTGGAAACATCTTTATTGCAGTTAGAATATAAATTCTAAATGTATTAAATAGGTGTCAAGCACTCTGCACTTACCTGTTGGTCACTGAGGTATAGTTGGTTTATTTTGCACTCAGAATAAGAACCATATCTATTTTTTGTTACTATCAGATTGAGTAATGTTGATTCTTGAGCTTCACAGAACTGTCAAAATCTTTTTGATGCATTATTTTGCTCCGCTCGTGTTCCATGTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'31-28,'31-27,32-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(38.9=85.4)
A:
PF120013=DUF3496=PD(10.0=56.2)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGAACAGAAGTCTCAGCC
R:
AGAAGCTCCAGCAGATCCAGT
Band lengths:
134-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]