HsaEX0006515 @ hg19
Exon Skipping
Gene
ENSG00000170653 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:792]
Coordinates
chr12:53900465-53917168:-
Coord C1 exon
chr12:53917060-53917168
Coord A exon
chr12:53910799-53911138
Coord C2 exon
chr12:53900465-53901811
Length
340 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCTCCTTCCTGGCAGAAA
3' ss Score
10.33
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
AATGAAGTCACATTACTACGCAATGAGGTGGCCCAGTTGAAACAGCTACTGTTAGCTCATAAAGACTGCCCAGTCACTGCACTACAGAAAAAGACTCAAGGCTATTTAG
Seq A exon
AAAGCCCCAAGGAAAGCTCAGAGCCAACGGGTTCTCCAGCCCCTGTGATTCAGCACAGCTCAGCAACAGCCCCTAGCAATGGCCTCAGTGTTCGCTCTGCAGCTGAAGCTGTGGCCACCTCGGTCCTCACTCAGATGGCCAGCCAAAGGACAGAACTGAGCATGCCGATACAATCGCATGTAATCATGACCCCACAGTCCCAGTCTGCGGGCAGATGATGCCTCCTCTGGTGGAGAGGTCCTCAGCCAGAGCTCGCCCGCCCAAGAGCCAAGAGAGATGTCATCTTATCCCCTCCCATCTGCCTTGGACATGGCAATATGGGTGGGGGGAATTGTGTGTT
Seq C2 exon
GCAAATCTGAGTAGCCTCCAAGAGGCACACAAGCAGAGGATGGGCTGTGTTGCCCTGACTGCCAGCCCCAGGCACAGAGGACCAGGCCTGGTCATCCTCACAGACTCTGACCCTGGCTCTTCCCACTCCTCTTCCACTCCAGGACATCCTACTTAACCCCTCCTGACATGAGTTTCTTGTGCTTTAGTCTACAGGTTAGGAAAGAGGGGAAGTGATAAACAAGCTCTCCAACCTGTTGAGGGATTAGGGGTTCGTCTAAGGCTCCCCAGGGCCTGGCTCTGACAAAGCGTCTGCAACTAATGATGCTTCTTGAGCTCTGGAGACAGGATTTATGCATCTAATAAAGTCTGTAACTCCAGGCTTAGGGGCCGGGGGCAGGAGGCTGAGAGCATGAAGTCCTGGGGGCGCCATGGGAGGAGATCCCAGGTGGCTCCTAATGAGCCCTGCATTTCCATTTGCCTGCTCTAGATTCCCCTAAGGCTACTGTGAGGCTGGGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170653_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.792 C2=NA
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PD(26.6=45.9)
A:
NO
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGTGGCCCAGTTGAAAC
R:
GGAGCCTTAGACGAACCCCTA
Band lengths:
352-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)