MmuEX1004570 @ mm10
Exon Skipping
Gene
ENSMUSG00000099083 | Atf7
Description
activating transcription factor 7 [Source:MGI Symbol;Acc:MGI:2443472]
Coordinates
chr15:102525946-102538291:-
Coord C1 exon
chr15:102538183-102538291
Coord A exon
chr15:102534099-102534438
Coord C2 exon
chr15:102525946-102526112
Length
340 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCTCCTTCCTGGCAGAAA
3' ss Score
10.33
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
AATGAAGTCACATTACTACGCAATGAGGTGGCTCAGCTGAAGCAGCTACTGTTAGCTCATAAAGATTGCCCAGTCACTGCACTACAGAAAAAGACTCAAGGCTACCTAG
Seq A exon
AAAGTCCCAAGGAAAGCTCAGAGCCAACGGGTTCTCCAGCCCCAGTGATTCAGCACAGTTCCGCATCAGCCCCTAGCAATGGCCTTAGTGTTCGATCTGCAGCTGAAGCTGTGGCCACCTCGGTCCTCACTCAGATGGCCAGCCAAAGGACAGAACTGAGCATGCCCATACAGTCACATGTGATCATGACCCCACAGTCGCAGTCTGCGGGCAGATGATGCCTCCCATGATGGAGAGGTCCCCAGCCAGAGCTCGCCCGCCTGAGCCAAGAGAGAGATCAACTTAACCCCTCCTGTCTGTCTTGGAATTGGGCAGAATGGAGAGGGAGAAATTGTGTGTT
Seq C2 exon
AACATCAGAAACCTGATCTAGAAGGTCTCCCTCTGCAGTAGAGCACCTGCCTACCATACACAAGGCTCTTCATTTGGACTTGATTCCCAAGAAAGAAATTTTAAAATGCCACTTATCCGCAAACCTAAAATGTAAGTTGGTTCCAATAAAGTACTTCCCTGTTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000099083_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.792 C2=1.000
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PD(26.6=45.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000184906fB6300
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACATTACTACGCAATGAGGT
R:
GCTCAACAGGGAAGTACTTTATTGGA
Band lengths:
271-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types