HsaEX0006515 @ hg38
Exon Skipping
Gene
ENSG00000170653 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:792]
Coordinates
chr12:53507856-53523384:-
Coord C1 exon
chr12:53523276-53523384
Coord A exon
chr12:53517015-53517354
Coord C2 exon
chr12:53507856-53508027
Length
340 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCTCCTTCCTGGCAGAAA
3' ss Score
10.33
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
AATGAAGTCACATTACTACGCAATGAGGTGGCCCAGTTGAAACAGCTACTGTTAGCTCATAAAGACTGCCCAGTCACTGCACTACAGAAAAAGACTCAAGGCTATTTAG
Seq A exon
AAAGCCCCAAGGAAAGCTCAGAGCCAACGGGTTCTCCAGCCCCTGTGATTCAGCACAGCTCAGCAACAGCCCCTAGCAATGGCCTCAGTGTTCGCTCTGCAGCTGAAGCTGTGGCCACCTCGGTCCTCACTCAGATGGCCAGCCAAAGGACAGAACTGAGCATGCCGATACAATCGCATGTAATCATGACCCCACAGTCCCAGTCTGCGGGCAGATGATGCCTCCTCTGGTGGAGAGGTCCTCAGCCAGAGCTCGCCCGCCCAAGAGCCAAGAGAGATGTCATCTTATCCCCTCCCATCTGCCTTGGACATGGCAATATGGGTGGGGGGAATTGTGTGTT
Seq C2 exon
GCAAATCTGAGTAGCCTCCAAGAGGCACACAAGCAGAGGATGGGCTGTGTTGCCCTGACTGCCAGCCCCAGGCACAGAGGACCAGGCCTGGTCATCCTCACAGACTCTGACCCTGGCTCTTCCCACTCCTCTTCCACTCCAGGACATCCTACTTAACCCCTCCTGACATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170653_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=0.792 C2=NA
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PD(26.6=45.9)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCACATTACTACGCAATGAGG
R:
CTCATGTCAGGAGGGGTTAAGT
Band lengths:
278-618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development