HsaEX0007722 @ hg38
Exon Skipping
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56617395-56636379:-
Coord C1 exon
chr12:56636182-56636379
Coord A exon
chr12:56630776-56630865
Coord C2 exon
chr12:56617395-56617532
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCCCCCACGCACAGGAA
3' ss Score
7.92
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGTCTGTCACACAGGGACATCACCCTACAGCAGTTCAGGCTGTGTGGTTCGCAGGAAGCATACACTGGCTTTTTGATTCTTGCTAGTTCCCAGCTCACAGTTTGGGAGGATCCAACACCAACCTTTACGTGAAGTGGAGGCCCAAGGACAGTGAGGAGCTGGGTGGTCCCAGCCTGGAGCTGTGCCAGCCTGACATGG
Seq A exon
GAATCTTTCCTTTCCGGTGACCAGGGCCCTGCAGATGTCGCCAGGAAAGTGGTGATCCAGGCAGGACCAGGCTGCACTGAAGGGACAGAG
Seq C2 exon
AAATGGAGGCAAACGACCATTTTAACTTTACTGGCCTTCCCCCTGCACCTGCTGCCTCAGGACTGAAACCCTCTCCTTCCTCAGGGGAGGGCCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108_MULTIEX2-1/5=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.908
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTACGTGAAGTGGAGGCCC
R:
GTTAGTGTAGAGGCCCTCCCC
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development