MmuEX6052094 @ mm10
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128091577-128109031:+
Coord C1 exon
chr10:128091577-128091776
Coord A exon
chr10:128096380-128096523
Coord C2 exon
chr10:128108894-128109031
Length
144 bp
Sequences
Splice sites
3' ss Seq
TACCCTTTGGCCACATTTAGGCT
3' ss Score
5.58
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ACCCCAGTCTGTCATACAGGGACATCACCCTACAGCAGTTCAGGCTGTGTCGTTCGCAGGAAGCATACATTGGCTTTTTTGGGGTTTGCGAGTTCCCAGCCCATAGTTGGACAGGATCCAACAGTAGCCTTCAATTGAAGCAAGACCCAAGGACAGTGAGAATCTGGGTCCTAATCCTGAGTCCTGCCAGCCTGACATGG
Seq A exon
GCTAGATTCAGATCTTGACTGTGTGGAGCCAGAGCCAAGTCTCCTTTCCCCATGTGCAGGATTCTCTCCAACGACCAAGGTCCTGCAGATGACACCAGGAAAGCAGTGATCCAGGCAGGACCAGGTTGTCCCTACAGGACATAG
Seq C2 exon
AAATGGAGGCAAACGACCATTTTAACTTTACTGGCCTTCCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCTCCTTCCTCGGGGGAGGGCCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054_MULTIEX1-2/3=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTTCGCAGGAAGCATACA
R:
GTTAGTGTAGAGGCCCTCCCC
Band lengths:
256-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types