MmuEX6052094 @ mm9
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127528691-127546087:+
Coord C1 exon
chr10:127528691-127528832
Coord A exon
chr10:127533495-127533579
Coord C2 exon
chr10:127545950-127546087
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTCCCCATGTGCAGGAT
3' ss Score
10.84
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGAAGCATACATTGGCTTTTTTGGGGTTTGCGAGTTCCCAGCCCATAGTTGGACAGGATCCAACAGTAGCCTTCAATTGAAGCAAGACCCAAGGACAGTGAGAATCTGGGTCCTAATCCTGAGTCCTGCCAGCCTGACATGG
Seq A exon
GATTCTCTCCAACGACCAAGGTCCTGCAGATGACACCAGGAAAGCAGTGATCCAGGCAGGACCAGGTTGTCCCTACAGGACATAG
Seq C2 exon
AAATGGAGGCAAACGACCATTTTAACTTTACTGGCCTTCCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCTCCTTCCTCGGGGGAGGGCCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'1-8,'1-6,4-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.984
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGACCCAAGGACAGTGAG
R:
AGACCCGTTAGTGTAGAGGCC
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: