HsaEX0010988 @ hg38
Exon Skipping
Gene
ENSG00000138658 | ZGRF1
Description
zinc finger GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:112547285-112553982:-
Coord C1 exon
chr4:112553835-112553982
Coord A exon
chr4:112548253-112548380
Coord C2 exon
chr4:112547285-112547408
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTGTTGTAATAAAGGTT
3' ss Score
5.52
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CTTGCATGCTGGCTCAGAAAATGAAAGTGAACAGTTAAAAGAACTACATGCACTAATGAAAGAAGACCTGACTCCTACGGAAAGAGTCTATGTGAGAAAAAGCATTGAGCAGCATAAACTGGGGACCAATAGAACCCTGCTGAAGCAG
Seq A exon
GTTCGAGTAGTTGGAGTTACCTGTGCAGCCTGCCCATTCCCATGCATGAATGATCTTAAATTTCCTGTAGTTGTGCTGGATGAGTGTAGTCAGATAACTGAACCGGCCTCTCTCCTTCCCATTGCAAG
Seq C2 exon
GTTTGAGTGTGAAAAGCTGATTCTTGTTGGGGATCCCAAACAGCTACCTCCTACTATTCAGGGTTCTGATGCAGCTCATGAAAATGGATTGGAACAAACTCTTTTTGATCGACTTTGCTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658_MULTIEX1-5/6=3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.141
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(20.9=100)
A:
PF130861=AAA_11=FE(17.9=100)
C2:
PF130861=AAA_11=PD(9.4=52.4),PF130871=AAA_12=PU(5.9=26.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCATGCTGGCTCAGAAAA
R:
TTCCAATCCATTTTCATGAGCTGC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development