MmuEX0001501 @ mm10
Exon Skipping
Gene
ENSMUSG00000051278 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127608485-127613466:+
Coord C1 exon
chr3:127608485-127608632
Coord A exon
chr3:127611784-127611911
Coord C2 exon
chr3:127613343-127613466
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACCGTTTCTTTCTATTGAAGGTC
3' ss Score
10.54
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
CTTGCATGCTGGCTCAGACAATGAAAGTGAACAATTGAAGGAACTCAATGCACTGTTGAAGGAAGAACTGACTCCTATTGAAAGAGTTTATGTCAGAAAAAGTATCGAGCAGCATAAGCTGGGAACCAACAGAGTCCTGCTAAAGCAG
Seq A exon
GTCCGAGTGGTTGGCGTTACCTGTGCAGCCTGCGCATTCCCGTGTCTGAATGACCTTAAGTTCCCCGTGGTTGTGCTGGATGAGTGCAGCCAGATGACAGAGCCAGCCTCCCTTCTTCCCATTGCAAG
Seq C2 exon
GTTTCAGTGTGAAAAGCTAATTCTTGTTGGAGACCCCAAACAGCTGCCTCCTACAATTCAGGGTTCTGATGCAGCTCATGAAAATGGACTGGAACAAACTCTCTTTGATCGGCTTTGCTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278_MULTIEX2-10/11=9-11
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(20.9=100)
A:
PF130861=AAA_11=FE(17.9=100)
C2:
PF130861=AAA_11=PD(9.4=52.4),PF130871=AAA_12=PU(5.9=26.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCTGGCTCAGACAATGA
R:
GCCGATCAAAGAGAGTTTGTTCC
Band lengths:
258-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types