HsaEX0011783 @ hg38
Exon Skipping
Gene
ENSG00000198870 | STKLD1
Description
serine/threonine kinase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr9:133400413-133403828:+
Coord C1 exon
chr9:133400413-133400529
Coord A exon
chr9:133401738-133401878
Coord C2 exon
chr9:133403700-133403828
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCTGGCTTGAGCAGCGC
3' ss Score
5.33
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
Exon sequences
Seq C1 exon
GTCTGCCGTGGCCCCCGGAGCTGGTGGAGGTGGTGGTCACGACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCTGTGTGCCTGCTCCCTGCTGCTGCACCTCCTGGGCCAAG
Seq A exon
CGCTGGTGCACCACCCGGAAGCCAAGGCTCCCTGCAACCAAGCCATCACCTCCACCCTGCTGAGTGCTCTTCAGAGCCACCCCGAGGAGGAGCCACTTCTTGTCATGGTCTACAGCCTGCTAGCCATCACCACAACCCAGG
Seq C2 exon
GTATCATTGTGAACAAGGCCCCCTTGGAGAAGGTCCCGGACCTCATCAGCCAGGTGTTGGCCACCTACCCTGCGGATGGGGAAATGGCAGAAGCCAGCTGCGGAGTCTTCTGGCTGCTGTCCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870_MULTIEX1-4/5=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGGTGGAGGTGGT
R:
CAGGGACAGCAGCCAGAAGA
Band lengths:
226-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development