HsaEX0011783 @ hg19
Exon Skipping
Gene
ENSG00000198870 | C9orf96
Description
chromosome 9 open reading frame 96 [Source:HGNC Symbol;Acc:28669]
Coordinates
chr9:136265541-136268141:+
Coord C1 exon
chr9:136265541-136265657
Coord A exon
chr9:136266867-136267007
Coord C2 exon
chr9:136268007-136268141
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCTGGCTTGAGCAGCGC
3' ss Score
5.33
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
Exon sequences
Seq C1 exon
GTCTGCCGTGGCCCCCGGAGCTGGTGGAGGTGGTGGTCACGACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCTGTGTGCCTGCTCCCTGCTGCTGCACCTCCTGGGCCAAG
Seq A exon
CGCTGGTGCACCACCCGGAAGCCAAGGCTCCCTGCAACCAAGCCATCACCTCCACCCTGCTGAGTGCTCTTCAGAGCCACCCCGAGGAGGAGCCACTTCTTGTCATGGTCTACAGCCTGCTAGCCATCACCACAACCCAGG
Seq C2 exon
AGTCAGAGTCACTGTCAGAGGAGCTGCAGAACGCTGGGCTGCTGGAGCACATCCTGGAGCACCTCAACAGCTCCCTCAAAAGCAGGGACGTCTGCGCCAGCGGCCTGGGCCTGCTCTGGGCCCTCCTGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870-'17-18,'17-17,18-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF050048=IFRD=PU(17.5=52.5)
A:
PF050048=IFRD=FE(39.2=100)
C2:
PF050048=IFRD=FE(37.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGCTGGTGGAGGTG
R:
CAGCAGGAGGGCCCAGAG
Band lengths:
234-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)