MmuEX6099786 @ mm10
Exon Skipping
Gene
ENSMUSG00000049897 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26949312-26950682:+
Coord C1 exon
chr2:26949312-26949428
Coord A exon
chr2:26950025-26950165
Coord C2 exon
chr2:26950554-26950682
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCTTGGCCCAATCAGCAC
3' ss Score
4.21
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGCTGCCATGGCCCACAGAGCTGCTGGAAGAGGTGATCAGCATCATAAAGCAGCATGGGCGGATCCTGGATATTCTGCTCAGCACCTGCTCCCTTCTGCTGCGTGTTCTTGGCCAAG
Seq A exon
CACTGGCAAAGGACCCAGAAGCTGAGATCCCAAGGAGCAGTTTGATCATCTCCTTCCTGATGGATACCTTGCGGAGCCATCCTAACTCTGAAAGGCTTGTTAATGTGGTCTACAACGTGCTTGCCATTATTTCCAGCCAAG
Seq C2 exon
GACAGATCTCAGAAGAGCTGGAAGAGGAGGGGTTGTTTCAGCTTGCCCAAGAGAACCTGGAGCACTTCCAAGAGGACAGGGACATCTGCCTCTCTATCCTGAGCCTGCTCTGGTCCCTCCTGGTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-'13-21,'13-20,19-21=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCATGGCCCACAGAG
R:
CATCTACCAGGAGGGACCAGA
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types