HsaEX0012843 @ hg19
Exon Skipping
Gene
ENSG00000171097 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:1564]
Coordinates
chr9:131595392-131597681:-
Coord C1 exon
chr9:131597602-131597681
Coord A exon
chr9:131596019-131596105
Coord C2 exon
chr9:131595392-131595922
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATGTCCTTCCTCCTCCCCAGGGC
3' ss Score
11.48
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AGAGGAAGATGCCTGACTTGCCTGGAGCTGTGGATGAGCCCTATGACAGACGCTTCGTCAAGTGGATGATCAAGAACAAG
Seq A exon
GGCTTGGTGGCCATCCCTGTCTCCATCTTCTATAGTGTGCCACATCAGAAGCACTTTGACCACTATATCCGCTTCTGTTTTGTGAAG
Seq C2 exon
GATGAAGCCACGCTCCAGGCCATGGACGAGAAGCTGCGGAAGTGGAAGGTGGAACTCTAGCCCTGAAGTCACGCCTTGGCCCTGACATCCCCACATGCCCGCAGAGATCCTCTTTGAGTGTCTGTCTTTGTCCAGGTTTCAGACATTTCTAGGTTGGGGAAGATGCTATTGGGAAACCTCTTCTCCGTGACACAGAATGTTCTGGGTGGGAGCCGCCCTTCTTCATCTTAGAGAACCAAGTGCCTCCTGTCTGAAAGGTGAGGGTGGCCTGACCTGGGCCTCTCCCTGCCCCTCCATAGGTGGGTTTGTAGGGTCTTGTGTTGCTTCTGGTCTCTCCAGGCTTGGCTGAGACGGACGGTAGACTTCCACCATGTACCGATCACATCCCAGCTCTGCATGGCCCCTGCTAAGGCTCAGGTATAACCTCACCTTCCCTGGCTCATCTTGGCCTTGGGGAGTTGCCTTTAGGCTTGAGTCCTCAAGCCTCTCCTTTTCGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PD(7.2=92.6)
A:
PF0015516=Aminotran_1_2=FE(7.2=100)
C2:
PF0015516=Aminotran_1_2=PD(2.8=55.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGGATGAGCCCTATGA
R:
AAAGAGGATCTCTGCGGGCAT
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)