MmuEX6100223 @ mm9
Exon Skipping
Gene
ENSMUSG00000039648 | Ccbl1
Description
cysteine conjugate-beta lyase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30040644-30041791:-
Coord C1 exon
chr2:30041712-30041791
Coord A exon
chr2:30041187-30041273
Coord C2 exon
chr2:30040644-30041089
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTGTTTGTCCCCAGGGG
3' ss Score
12.1
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
AGAGCAGCATGCCCGACCTGCCTGGTGCTATGGATGAGCCCTATGATACACGCTTTGCCAAGTGGATGATCAAAAACAAG
Seq A exon
GGGCTGTCAGCCATCCCTGTCTCCACCTTCTATAGCCAGCCCCATCATAAGGACTTTGACCACTACATCCGATTCTGTTTTGTGAAG
Seq C2 exon
GACAAGGCTACACTCCAGGCCATGGATAAGAGGCTGTGCAGCTGGAAAGGAGAGCCCCAAGCCTGAGGCGCTCAGGCCCGCCTCCAACCCCGAGACCTCAGCTGTGCCTTATCACAGAGATGGCGCTGCAGGGCCCAGATGTGTGACTGGGCATGTTTCCAGGAAAGAGGCCATCTCTTGGGGGTTTCAGCCATCTTACCCAGTGTCTGGACTGCTATATTGGGTTGGGGGCTGGTTCTGGAACTCAGTCTGCGCCTCTATAGGTTCTTGTAGAGCCTTGGTTGTTTCTGGCCTCTGCCTGGGACAGTAAAGGATGGAGGATCAGGCCTGGAGCCCCAGCCCCACCTTAGCCCTGCTGAGGCTCCATGGCTTCTCCACTTCTTCTCATGTGACCTCACAGTGTTGCTACTGTTCCTAATAAAGTTTTAAGTTATTAGAACCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648-'17-21,'17-18,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(11.5=100)
A:
PF0015516=Aminotran_1_2=FE(12.3=100)
C2:
PF0015516=Aminotran_1_2=PD(2.8=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTATGATACACGCTTTGC
R:
GCAGCGCCATCTCTGTGATAA
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: