DreEX6011820 @ danRer10
Exon Skipping
Gene
ENSDARG00000023645 | ccbl1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:ZFIN;Acc:ZDB-GENE-040426-2676]
Coordinates
chr5:32666257-32668304:-
Coord C1 exon
chr5:32668228-32668304
Coord A exon
chr5:32668038-32668124
Coord C2 exon
chr5:32666257-32666963
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGTCATTCACTTCTGAATAGGGA
3' ss Score
6.7
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
ATGTTGATCTTAATGACCCTACTACTAAGGAAGAACCATATGACTACAGATTTGTGAAATGGCTCATTAAAGAGAAG
Seq A exon
GGACTGGCCACCATCCCGGTATCTGCTTTCTACAGTCCAGAACACAGAGACCAATTCCAAAAATACATCAGATTCTGCTTTGTTAAG
Seq C2 exon
GAGGACTCGACCCTGCAAGCAGCAGAGAACATCCTAAAACAGTGGAGTGAAAACAAATGAAAAAATCCTGTCAGATTAAAACTGCACAGACAGTCTGTTTGGCTTATGAATAGTTAGCGAAACGTGTTTGATGATGTTATTGGGCTTAAGGTTGAATATGCTTGCAGGATTAGCAGATGGTGTAAAAACTTTTAGGGGATTTTTGAGCAAAAAAATTAAATCTATGTTCTAAATCCATGAATCATTGCTGCCATGAAAACAATCATTACACAATTTTCTTCCCTAAACAAATAGTATAGGTGGAATTTCTCTCAGTCTTTTAATCATTATTATCCTTTGGTTGTAATGTTCTCGATTTTCTTGTTTGTCTTCAAGTAGCCACATATTTTCTTCCATTTGTTCCGTTCTTGGATTATACTTTAATCTGATTATACTTCATAATGTCTGTTATGACCCTCTGGTTCCAGTCCATGTAAGAAATTACACATTAATATTTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023645-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(6.5=100)
A:
PF0015516=Aminotran_1_2=FE(7.3=100)
C2:
PF0015516=Aminotran_1_2=PD(2.6=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTACAGATTTGTGAAATGGCTCA
R:
ACATCATCAAACACGTTTCGCT
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]