GgaEX6015136 @ galGal4
Exon Skipping
Gene
ENSGALG00000004604 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr17:5284710-5285968:-
Coord C1 exon
chr17:5285892-5285968
Coord A exon
chr17:5285469-5285555
Coord C2 exon
chr17:5284710-5285287
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTGCATCTTCCCCTCCCCAGGGA
3' ss Score
10.22
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AATCTGAAGTCCCTGATGTCCCCAACTCCGATGAGCCCTATGACTCCAGATTTGCCAAGTGGATGGTCAAGAACAAG
Seq A exon
GGACTGGCGGCCATCCCCCTCTCGGCGTTCTACTGTGGGGCCCACAAGGACAACTACAACACTTTCATCCGGTTCTGCTTCGCCAAG
Seq C2 exon
GAGGATGCCACGCTGAAGGCAGCAGACGACATACTGCAAAGATGGAAACTGGAGAAAACTGCTCCCTGAAGGCACTGCGGGGGAACCGTCTCTCCACGGCTGCACTTCTTCCTCTTCCTTTACTTGGCTACAAACTCTGCTACGTCCTGATTTTTGTGCTTTCAACCACGTTTTCTGTCAGACAAGCGGGTATGAGGGCTGCCAGGCCCAGGACTGGGGGACACAGCTTTCACTGTGAAACAATCACGAGCAGTGAGCCTCCATATGCCATTCAGCTGCCATTCAGCACTTTTCCTCCACGTTTAAAGACTTTGCTCATCAATTCTGAGATGTGCACAGCGAGACACAACGGTAAGGATGGCTCCTGGGGTCTTTTCCATCACTCACTTTCAGGAGGCTGTATGGGATCACTGCCCCTCAGCAAGCTGATTCCCACAGTCCTGAAAGCTGTGAACCCAGAGATCTGAGGTTTGCTAAAATTAGCAATATTCCCTTTGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
80%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(6.4=100)
A:
PF0015516=Aminotran_1_2=FE(7.2=100)
C2:
PF0015516=Aminotran_1_2=PD(2.6=43.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATGAGCCCTATGACTCCA
R:
GGAAGAGGAAGAAGTGCAGCC
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]