GgaEX6015136 @ galGal3
Exon Skipping
Gene
ENSGALG00000004604 | CCBL1
Description
NA
Coordinates
chr17:5912892-5914150:-
Coord C1 exon
chr17:5914074-5914150
Coord A exon
chr17:5913651-5913737
Coord C2 exon
chr17:5912892-5913469
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTGCATCTTCCCCTCCCCAGGGA
3' ss Score
10.22
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AATCTGAAGTCCCTGATGTCCCCAACTCCGATGAGCCCTATGACTCCAGATTTGCCAAGTGGATGGTCAAGAACAAG
Seq A exon
GGACTGGCGGCCATCCCCCTCTCGGCGTTCTACTGTGGGGCCCACAAGGACAACTACAACACTTTCATCCGGTTCTGCTTCGCCAAG
Seq C2 exon
GAGGATGCCACGCTGAAGGCAGCAGACGACATACTGCAAAGATGGAAACTGGAGAAAACTGCTCCCTGAAGGCACTGCGGGGGAACCGTCTCTCCACGGCTGCACTTCTTCCTCTTCCTTTACTTGGCTACAAACTCTGCTACGTCCTGATTTTTGTGCTTTCAACCACGTTTTCTGTCAGACAAGCGGGTATGAGGGCTGCCAGGCCCAGGACTGGGGGACACAGCTTTCACTGTGAAACAATCACGAGCAGTGAGCCTCCATATGCCATTCAGCTGCCATTCAGCACTTTTCCTCCACGTTTAAAGACTTTGCTCATCAATTCTGAGATGTGCACAGCGAGACACAACGGTAAGGATGGCTCCTGGGGTCTTTTCCATCACTCACTTTCAGGAGGCTGTATGGGATCACTGCCCCTCAGCAAGCTGATTCCCACAGTCCTGAAAGCTGTGAACCCAGAGATCTGAGGTTTGCTAAAATTAGCAATATTCCCTTTGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604-'15-16,'15-14,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(6.4=100)
A:
PF0015516=Aminotran_1_2=FE(7.2=100)
C2:
PF0015516=Aminotran_1_2=PD(2.6=43.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATGAGCCCTATGACTCCA
R:
GGAAGAGGAAGAAGTGCAGCC
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]