HsaEX0013759 @ hg19

Exon Skipping

Gene

ENSG00000177575 | CD163

Description

CD163 molecule [Source:HGNC Symbol;Acc:1631]

Coordinates

chr12:7632456-7635358:-

Coord C1 exon

chr12:7635239-7635358

Coord A exon

chr12:7633757-7633852

Coord C2 exon

chr12:7632456-7632509

Length

96 bp

Sequences

Splice sites

3' ss Seq

CTAGGGATCTCTGTTTTCAGTTT

3' ss Score

6

5' ss Seq

CAGGTCTGT

5' ss Score

6.84

Exon sequences

Seq C1 exon

GTCGCTCATCCCGTCAGTCATCCTTTATTGCAGTCGGGATCCTTGGGGTTGTTCTGTTGGCCATTTTCGTCGCATTATTCTTCTTGACTAAAAAGCGAAGACAGAGACAGCGGCTTGCAG

Seq A exon

TTTCCTCAAGAGGAGAGAACTTAGTCCACCAAATTCAATACCGGGAGATGAATTCTTGCCTGAATGCAGATGATCTGGACCTAATGAATTCCTCAG

Seq C2 exon

GAGGCCATTCTGAGCCACACTGAAAAGGAAAATGGGAATTTATAACCCAGTGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000177575_MULTIEX1-2/2=1-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.033 A=0.054 C2=0.397

Domain overlap (PFAM):

C1:

PF0168214=DB=PD(15.9=25.0),PF135841=BatD=FE(42.4=100),PF063657=CD34_antigen=FE(37.9=100),PF066977=DUF1191=FE(38.2=100),PF151021=TMEM154=FE(44.3=100),PF118373=DUF3357=FE(48.1=100),PF097774=OSTMP1=FE(49.4=100),PF0769011=MFS_1=FE(52.7=100),PF041569=IncA=PU(62.1=90.0),PF145751=EphA2_TM=PU(59.3=80.0)

A:

NO

C2:

PF135841=BatD=PD(21.7=46.5),PF063657=CD34_antigen=PD(37.9=90.7),PF066977=DUF1191=PD(17.6=41.9),PF151021=TMEM154=PD(20.5=41.9),PF118373=DUF3357=PD(23.5=44.2),PF097774=OSTMP1=PD(16.5=30.2),PF0769011=MFS_1=PD(41.9=72.1),PF041569=IncA=PD(34.5=46.5),PF145751=EphA2_TM=PD(37.0=46.5)

Main Inclusion Isoform:

ENSP00000379863