MmuEX6006845 @ mm9
Exon Skipping
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124276519-124279115:+
Coord C1 exon
chr6:124276519-124276626
Coord A exon
chr6:124277916-124278005
Coord C2 exon
chr6:124279063-124279115
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATCCCTAACTCTGTTATCAGTTT
3' ss Score
5.98
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
Exon sequences
Seq C1 exon
GTCACCCCACCCTCACGGCACTCTTGGTTTGTGGAGCCATTCTATTGGTCCTCCTCATTGTCTTCCTCCTGTGGACTCTGAAGCGACGACAGATTCAGCGACTTACAG
Seq A exon
TTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCAAAGGCGGATGATCTGGACTTGCTGAAATCCTCGG
Seq C2 exon
GGGTCATTCAGAGGCACACTGAGAAGGAAAATGATAATTTATAATCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845-'13-15,'13-13,14-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.239
Domain overlap (PFAM):
C1:
PF063657=CD34_antigen=FE(37.5=100)
A:
PF063657=CD34_antigen=FE(31.2=100)
C2:
PF063657=CD34_antigen=PD(10.4=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCCCACCCTCACGG
R:
ATCATTTTCCTTCTCAGTGTGCCT
Band lengths:
143-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: