RnoEX0018528 @ rn6
Exon Skipping
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156779747-156784869:+
Coord C1 exon
chr4:156779747-156779854
Coord A exon
chr4:156780935-156781024
Coord C2 exon
chr4:156784667-156784869
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATCCCTAACTCTGTTGTCAGTTT
3' ss Score
5.76
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
Exon sequences
Seq C1 exon
GTCATTCAACCCTCACTGCACTCCTGGTTTGTGGAGCCATTCTATTGGTCCTTCTCATTGCCTTCCTCTTGTGGACTCTGAAGCGACGACAGACCCAACGGCTTACAG
Seq A exon
TTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCGAAGACGGATGATCTGGACTTGCTGAAATCCTCGG
Seq C2 exon
GTTGGCATTTAAGAAACCTTGACATGACAGCCAGCTAAATGGACAAGAGCCCAGTCCGTGCACGGATGACCACAGCTACATCTTCACGCTGTCCTTTGTTTGCTGGCACTCTACTGAACCTGCAGAAGCCATGTTTGTGAATGTGACCACTGAATAGATATGGGAGACTTTCAAGGGTATTAAATAAACGATATTGTTATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253-'15-21,'15-18,16-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTCCTCTTGTGGACTCT
R:
AGGTTCAGTAGAGTGCCAGCA
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]