HsaEX0015613 @ hg38
Exon Skipping
Gene
ENSG00000188393 | CLEC2A
Description
C-type lectin domain family 2 member A [Source:HGNC Symbol;Acc:HGNC:24191]
Coordinates
chr12:9922066-9932347:-
Coord C1 exon
chr12:9932275-9932347
Coord A exon
chr12:9926260-9926343
Coord C2 exon
chr12:9922066-9922232
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGATTTAATTTGCAGTTC
3' ss Score
7.76
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATCGGTTAGCGCCTTGCCATGATTAATCCAGAGCTGCGGGATGGCAGAGCTGATGGCTTCATACATCGGATAG
Seq A exon
TTCCCAAGTTGATACAAAACTGGAAGATTGGCCTTATGTGCTTCCTGAGTATTATTATTACTACAGTTTGCATTATTATGATAG
Seq C2 exon
CCACATGGTCCAAGCATGCTAAACCTGTGGCATGTTCAGGGGACTGGCTTGGAGTGAGAGATAAGTGTTTCTATTTTTCTGATGATACCAGAAATTGGACAGCCAGTAAAATATTTTGTAGTTTGCAGAAAGCAGAACTTGCTCAGATTGATACACAAGAAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188393_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(34.6=48.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCTTGCCATGATTAATCC
R:
ACTGGCTGTCCAATTTCTGGT
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development