MmuEX7003521 @ mm10
Exon Skipping
Gene
ENSMUSG00000000248 | Clec2g
Description
C-type lectin domain family 2, member g [Source:MGI Symbol;Acc:MGI:1918059]
Coordinates
chr6:128979396-128981383:+
Coord C1 exon
chr6:128979396-128979478
Coord A exon
chr6:128980184-128980309
Coord C2 exon
chr6:128981205-128981383
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTATATTCATATTTTACAGATA
3' ss Score
9.44
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTTTGTGTATCACATGAATGCTCAGTGCCTAAAGAAGCCAGAAGAAGGCGAAAGCTCCCCCGGAACTGGAGGTGTACATTCTT
Seq A exon
ATAAAATTCTCCAAAGAAATAGTCTCAGAGCCATCTCCCCTGAGTCTTCTGCTAAGCTTTACTGCTGCTGTGGAGTGATCATGGTCCTCACTGTAGCTGTAGTTGCTCTTTCTGTTGCTTTGCCAG
Seq C2 exon
CAACAAAGACAGAACAGATCCTAATCAACAAGACCTATGCTGCTTGCCCGAAAAACTGGATTGGAGTTGGAAATAAATGTTTTTATTTTTCTGAATACACAAGTAACTGGACATTCGCCCAGACCTTCTGCATGGCACAAGAGGCCCAACTAGCTCGGTTTGACAACGAGAAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000248-'1-9,'1-8,11-9=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(26.7=100)
A:
PF0005916=Lectin_C=PD(21.0=51.2)
C2:
PF0005916=Lectin_C=PU(28.1=45.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGTGCCTAAAGAAGCCA
R:
AGCTCCTTCTCGTTGTCAAACC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types