HsaEX1034552 @ hg38
Exon Skipping
Gene
ENSG00000272917 | RP11-705C15.5
Description
NA
Coordinates
chr12:9648468-9655979:+
Coord C1 exon
chr12:9648468-9648933
Coord A exon
chr12:9653683-9653808
Coord C2 exon
chr12:9655873-9655979
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGATGTTTCTATTTTACAGATA
3' ss Score
10.42
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGTTTGCAGAACTTTGGGGGACCTGAGAGGGGAGTGCCCCCTGGACGGGCCACGGCTGTCTGTGGCTTAAGGGCTTTTGGAAGGGCGGAGAGAGGGAAACGGCGTCCTAGTGGCCTGCTTCAGGGCCACCCACGGGCCCTCCCCCAACCTCTCTCTGATCCAACTTGTTTTTCCAGCCTAGTTGGAAACTTGTGGATGCTGTGACCTCAAGAAGACTTGGCATTTTATTTGGAAGATAGACATCTATTTGCAACTGTCCTGAGCCCCTATTTTCCTCCCACCTTTCTTGGGGAAACTTGTTTTTAAGGGATGCCACTGTTTTTGTAACATGTTGCTCCTAGCTCTTAGCATTCATGGTACTGTTGTAACCGTCCAGTGGGTTCACTTTGTCTGCTAGATAGAGCCGATTTATCAAGACGGGGATTACAATGGAGAAAGAGTAATTCACGCAGAGCCGGCTTTGCAG
Seq A exon
ATAAAACTCTGCAAAGACAATGTCTAGCACTTATATCTCCAGTAACTCCTGTCAAGGTTTATTGTTGCTTGTTCATCATTGCAGTCCTGACTACAAGTGTGATTGCACTTTCTATTGTTTTGTCAG
Seq C2 exon
AATTTCCTGAAAAGATACAAAGGCCCTTCTGACCATTGGATTGGCCTTAGAAGAGAATCATCCCATCGCATTTGGAAATGGACAGACAACATGGAATATAATAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272917_MULTIEX1-5/6=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCCCTATTTTCCTCCCA
R:
ATCCAATGGTCAGAAGGGCCT
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains