HsaEX0015641 @ hg19

Exon Skipping

Gene

ENSG00000172243 | CLEC7A

Description

C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:14558]

Coordinates

chr12:10277896-10280444:-

Coord C1 exon

chr12:10280346-10280444

Coord A exon

chr12:10279639-10280041

Coord C2 exon

chr12:10277896-10278047

Length

403 bp

Sequences

Splice sites

3' ss Seq

CTCCTACCTCCCTTACATAGCTG

3' ss Score

7.42

5' ss Seq

AAGGTGAAA

5' ss Score

4.51

Exon sequences

Seq C1 exon

GATCGTGTGCTGCATCTCCTCCTTGGCGCCTCATTGCTGTAATTTTGGGAATCCTATGCTTGGTAATACTGGTGATAGCTGTGGTCCTGGGTACCATGG

Seq A exon

CTGGTTTCAAAGCTGTGGAATTCAAAGGATAAATTAATGAAGAAAACAAGCGGAGCTGAAGAAGAAAGTACAATATGGTGCTGTCTTCCTAATGAAATAAATTCACTAAATGGACATTAAGCTATTTTTATGATTCACATTATTTAAGGAAATTATTTCCGATCTTTAATATAAACACCTTTGAATACACCAGAAATTTCCTGAGGCACTTGGTCTTAAGTCGATATTTTGTAATGGATTAATATTTTTTTTACATTTTATATCACATGCAATCTGTTGTCAGTCACCTTCAGAGAGTCTTCATGACATTCCTTAATTAGTCAAATGTTTATTGAGTGCGTTCTATGTTATAGGTACTGGGCAGTTTCTCAAGGATCTCTCATTTTTAAATAACAGAAGAAAG

Seq C2 exon

GGGTTCTTTCCAGCCCTTGTCCTCCTAATTGGATTATATATGAGAAGAGCTGTTATCTATTCAGCATGTCACTAAATTCCTGGGATGGAAGTAAAAGACAATGCTGGCAACTGGGCTCTAATCTCCTAAAGATAGACAGCTCAAATGAATTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000172243_MULTIEX2-2/3=1-C2

Average complexity

C2*

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF139031=Claudin_2=FE(38.8=100),PF0033515=Tetraspannin=FE(24.6=100),PF0769011=MFS_1=FE(28.9=100),PF083915=Ly49=PU(36.8=82.4),PF059667=Chordopox_A33R=PU(20.5=73.5)

A:

PF083915=Ly49=PD(29.3=70.6)

C2:

PF0033515=Tetraspannin=PD(35.1=92.2),PF0769011=MFS_1=PD(25.4=56.9),PF083915=Ly49=PD(1.3=2.0),PF059667=Chordopox_A33R=FE(41.0=100)

Main Inclusion Isoform:

ENSP00000312089