HsaEX0015641 @ hg38
Exon Skipping
Gene
ENSG00000172243 | CLEC7A
Description
C-type lectin domain family 7 member A [Source:HGNC Symbol;Acc:HGNC:14558]
Coordinates
chr12:10125297-10127845:-
Coord C1 exon
chr12:10127747-10127845
Coord A exon
chr12:10127040-10127442
Coord C2 exon
chr12:10125297-10125448
Length
403 bp
Sequences
Splice sites
3' ss Seq
CTCCTACCTCCCTTACATAGCTG
3' ss Score
7.42
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
GATCGTGTGCTGCATCTCCTCCTTGGCGCCTCATTGCTGTAATTTTGGGAATCCTATGCTTGGTAATACTGGTGATAGCTGTGGTCCTGGGTACCATGG
Seq A exon
CTGGTTTCAAAGCTGTGGAATTCAAAGGATAAATTAATGAAGAAAACAAGCGGAGCTGAAGAAGAAAGTACAATATGGTGCTGTCTTCCTAATGAAATAAATTCACTAAATGGACATTAAGCTATTTTTATGATTCACATTATTTAAGGAAATTATTTCCGATCTTTAATATAAACACCTTTGAATACACCAGAAATTTCCTGAGGCACTTGGTCTTAAGTCGATATTTTGTAATGGATTAATATTTTTTTTACATTTTATATCACATGCAATCTGTTGTCAGTCACCTTCAGAGAGTCTTCATGACATTCCTTAATTAGTCAAATGTTTATTGAGTGCGTTCTATGTTATAGGTACTGGGCAGTTTCTCAAGGATCTCTCATTTTTAAATAACAGAAGAAAG
Seq C2 exon
GGGTTCTTTCCAGCCCTTGTCCTCCTAATTGGATTATATATGAGAAGAGCTGTTATCTATTCAGCATGTCACTAAATTCCTGGGATGGAAGTAAAAGACAATGCTGGCAACTGGGCTCTAATCTCCTAAAGATAGACAGCTCAAATGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172243_MULTIEX1-2/6=1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033515=Tetraspannin=FE(23.4=100),PF083915=Ly49=PU(35.0=82.4)
A:
PF083915=Ly49=PD(29.3=70.6)
C2:
PF0033515=Tetraspannin=FE(35.5=100),PF083915=Ly49=PD(6.2=9.8),PF0005916=Lectin_C=PU(25.2=52.9)
Main Inclusion Isoform:
ENST00000529761fB1665
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGTGTGCTGCATCTCCTC
R:
TCATTTGAGCTGTCTATCTTTAGGA
Band lengths:
247-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development