HsaINT0036279 @ hg38
Intron Retention
Gene
ENSG00000172243 | CLEC7A
Description
C-type lectin domain family 7 member A [Source:HGNC Symbol;Acc:HGNC:14558]
Coordinates
chr12:10125297-10127845:-
Coord C1 exon
chr12:10127747-10127845
Coord A exon
chr12:10125449-10127746
Coord C2 exon
chr12:10125297-10125448
Length
2298 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TACTAATCTTTTATTTCCAGGGG
3' ss Score
7.73
Exon sequences
Seq C1 exon
GATCGTGTGCTGCATCTCCTCCTTGGCGCCTCATTGCTGTAATTTTGGGAATCCTATGCTTGGTAATACTGGTGATAGCTGTGGTCCTGGGTACCATGG
Seq A exon
GTGAGTATTTGGTGGAGGAGATTAACAACAGACAATTTAGTAAGCAATTATTATGTGCCAGGCACTCTTTTAAGGGCTTGACATGCATAATCTACTTTAATTTGTATATAATCTGGTTTTATCTGTATTGGGTTGGTGCTGTTAATGCCCATTTCACTTATAAAGGGTGTGAGAGACTGAGAGGTTATTTTACCTTTCCAGGGTTATAAGCTAGTTAGTGGTGGGACCATGATTAGAAATTTGGGTGATCTGTCTAAAAAACTCATACTCTTAACTACATTGCTCTCCTACCTCCCTTACATAGCTGGTTTCAAAGCTGTGGAATTCAAAGGATAAATTAATGAAGAAAACAAGCGGAGCTGAAGAAGAAAGTACAATATGGTGCTGTCTTCCTAATGAAATAAATTCACTAAATGGACATTAAGCTATTTTTATGATTCACATTATTTAAGGAAATTATTTCCGATCTTTAATATAAACACCTTTGAATACACCAGAAATTTCCTGAGGCACTTGGTCTTAAGTCGATATTTTGTAATGGATTAATATTTTTTTTACATTTTATATCACATGCAATCTGTTGTCAGTCACCTTCAGAGAGTCTTCATGACATTCCTTAATTAGTCAAATGTTTATTGAGTGCGTTCTATGTTATAGGTACTGGGCAGTTTCTCAAGGATCTCTCATTTTTAAATAACAGAAGAAAGGTGAAAGATGTTGCTATTTCAAATCTGTCATGGGTCCAATTGACTCTATGACATTTGCCTCTTGCTGCCTCCCTCATTCTATTTCTTCTTCTCCACCTTCTTTTTTCTTTTCTTTTTTTTTTTTTACTATACCTCCTTTATAAAAGTTATGTATTTCTTTTCATCTATTCTATCAATCGTCTTTATCTCTCCACAGCAATATATCATCTATTTATCATTAATCAATAATGTATTCTTTTATTCCAATAACATTTGGGTTTTGGGATTTTAATTTTCAAACACAGCAGAATGACATTTTTTCTGTCACTATTATTATTGTTGGTATGTGAAGCTATTTGGAGATCCAATTCAGGAAGCAACACATTGGAGAATGGCTACTTTCTATCAAGAAATAAAGAGAACCACAGTCAACCCACACAATCATCTTTAGAAGACAGTGTGACTCCTACCAAAGCTGTCAAAACCACAGGCAAGGGCATAGTTAAAGGACGGAATCTTGACTCAAGAGGGTTAATTCTTGGTGCTGAAGCCTGGGGCAGGGGTGTAAAGAAAAACACTTAGATTCAATGATTGTAAATTTAAGGCAAATACACATATTAGTATTACCTTAGTGTAATGTATCCCTGTCATATATACAATAAGGTGAAATTATAAGTACCCTATGCAGTTGGCTGGACAGTTCTAAATTGGACTTTATTAATTTTTAAAATCAGTAACTGATTTATCACTGGCTATGTGCTTAGATCTACAGGAGATCATATAATTTGATACAAATAAAAGAAAAGTGTTCTCTCCCCTTACAGAATTGACATTTTAAATGCGATACAGTTAGAATAGGAAATATGACATTAGAAAGGAAGAATGACAGGGAGAAAGGAAAGAAGGGAAAATGTTGCCAAGAATAAGGAAGCTATATTAAAAATATACAAAAGAGGTAGACCTAATACACATGTCCCTGAAAACTCATCAAATTTGTTTAATCATACAATTTCATTTACTTAATTACAATTCTATACACACTTGACTTTTACTTCTAATTGCATCATAATTGACTATGACTTAATGTTTTCAGTTCAATTTTTCATCTCTGGACCCATACCTTCTCACTATTTTTATTAAGTAGCTAATAATATATAACAGAGATAGTGTATAATATGAATAATTGGCCTATACTTTTCTCACTTGGAAAGTCACATTATGAAGTAGATCTTACATCATAAAATAAGTAGCAATATGAAATTGCTGTGTACCTCAATGACTGATTGTGAGTGGACTTATTTTAAGGAGTTATTAAGGAGAAAGGTAGTTTTGAGCTGAATTAGAAGGAATAGAAGACAAGTGAAGAAAAAAAGGATGGTTGGCTGCCTAAAATACTATTTATAGCTAGTTTGTTTTTAAATTTTAAATGAATAGGAAGATTTTAATGTATTCTCATCTGTAAAATCATATCCCTGTAGTTCGAATTGACAATGAAATATAAAAATGGCAACTAATTGGTTATTTCATAAGTGTCCTTAAGATGAATGGTGTTCACACTAAAAGAGTGAATTGGTATGCTATGAACCTCATGGTACTAATCTTTTATTTCCAG
Seq C2 exon
GGGTTCTTTCCAGCCCTTGTCCTCCTAATTGGATTATATATGAGAAGAGCTGTTATCTATTCAGCATGTCACTAAATTCCTGGGATGGAAGTAAAAGACAATGCTGGCAACTGGGCTCTAATCTCCTAAAGATAGACAGCTCAAATGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172243:ENST00000353231:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033515=Tetraspannin=FE(23.4=100),PF083915=Ly49=PU(35.0=82.4)
A:
NA
C2:
PF0033515=Tetraspannin=FE(35.5=100),PF083915=Ly49=PD(6.2=9.8),PF0005916=Lectin_C=PU(25.2=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development