RnoINT0037237 @ rn6
Intron Retention
Gene
ENSRNOG00000054251 | Clec7a
Description
C-type lectin domain containing 7A [Source:RGD Symbol;Acc:1565140]
Coordinates
chr4:163222641-163225245:-
Coord C1 exon
chr4:163225147-163225245
Coord A exon
chr4:163222793-163225146
Coord C2 exon
chr4:163222641-163222792
Length
2354 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
ATATTAATTTTTCCTTCCAGGCG
3' ss Score
10.91
Exon sequences
Seq C1 exon
GAAGCCCAGCTCCATCTTCTCGTTGGCGGTCCATTGCGGTAGCTTTAGGAATCCTGTGCTTGCTCACAGTAGTGGTCGCAGCAGTGCTGGGTGCCCTAG
Seq A exon
GTGAGTATGGGTGAGGGAGGTTGATAAAGGCACGGACAGTGATTATGAAATTAATTTATGCCAGGCACTCTCTCAAGGGGTTGGCGTGTATAACTTCATTTAATCCTTACATTAACCCCATTGGGTTTGTGCTATTAATTTGTCTCAGTTATAGGAGAATTTAGAAATTGGAAGATTAACTCTTCCATAGTTATAAGCTAGTCAGTGGTGGAATTATAAGAAATGTAGAAAATCTGCTTCATAAAACACATACTTTTCAGTATATTGCTCTACTGTTCTACATAGATAGGTGACTTTTTTTAAAGTGGAATTTAAAGTATAAGTTAGTGGAGGGAAACTTGCAGAGCCAAAAGAAACACAATCTTCCTTAGAAGACAGCTATATTAAGTTAAAATGAGTTGTGTGTAATTTTTTTGAAAGCCTCATGATACATGGGAATTATCTTACACATGATCTTTAATAAAGAATATCTTAACTTTACCAAGTATTGCCTGAGGCACTGAAAAATTACTAAGCAGATGCTTTGTGAAGACTTAATAGATCTCTTTAGGTTTCTATATTTCGTGAATCCTATGCCGATAAAGTTATATGATACCTTCAAAGAACCTTCGTCACTTATTAGTCAAATGCTTGCTGAGAACAGAGACATTCTATGTATTCCATGTTTGGTAACTCTCAGATTGCTAGCTAGCATTTTGAAGTAATTGAAGAAAGCAAAAGGTATTACTTTGTTAAATTATTATTTAAAATTGTTTACAATTCACAGTTAGATCTATGTCATTTTCTTTTTGCTACCTTCCTCACTGGCCTTTCTGTGTATTTCATATATTATCTATGCGTGAACCATTTGACTCTGTCCTTTTGTCAGTGATGTACCATTTATTTCTCATTAAGTATAGGTGTCCCCTATGTGCTTCCATAAAATATGGGTGCTGTCATTTCAGTTTTCAAGCAGAGCACAATGACTTTCTTTTCTGTCACTCTTGCTGTTCGTGACATATGAAGCATTTCGGAGATTCAATTCAGGGAGATATCCAGAGGAGAAAGACAACTTCCCATCAAGAAATAAGGAGAACCACAAACCCACAGAACCATCTTTAGATGAGAAGGTGGCTCCCTCCAAGGCATCCCAAACTACAGGCAAGGGCAGAACTAAAGGAGCAATGGGATCCTGGATTCCAGAGGTTCATTTCCTGGTACTGAGGCTTGGGGTGGGGAATGTATTTACATCTAATAACAATGCATTCAAGGGAAGCAGGTCTAACAATTTCTGTAGCATAACATACCCTGCCAGAGAGCTGGTAAAGTGGCATCACAAATCCACAGCTCTTTAACTTACTAAAAGGAGCAGTAGCTGCTTTTGTCTGGCTGTGTGCCAAAACCTACCAGATATAATGTAATTTGATGCAAAGAAAGGAGCAGTGCAGTGTTCAGTGCCTTTACGGAACTGGTATTGTTTTTACAGTGATGTTGTTAGAATAAGAAAGAGATGTAAGGGAAAGGGGATGAAGGGCGGGAAGTGTATAAGAGACACTGTAGATTGTAAATGCTACTAAGAATATACAGAAGGGACAGACCTTCACATCAGTAAAAATTCCCATTTGAGCACATTCAATCGGCATTTGTTTGATTTCATAACAATTGTTTTCTATATCCTGTGTTTCTGATTGCCTCATAATGGACTCAATGCCTTCCCTTCAGCATTCCATCTCTGAACTTACCTCCCCACTGCCTTCAACTAACAAAATACAAAAGAGCCTTTGAAATATAAACAATTACATTTATGCGTCTTCATAAGATAAATTAAGTCAAGGAGAGCCCCTGTTTGTAGCCATTGCTTTTGCTTGTATCTGTTTTACACAGAATCAATACAGAAAGGGAATCTAGGCCTAAATCTGAAATGATGGAAAAGATAAGTCTAGTCATCTATTTAAAACATTATAATTACTCAACTGATTTTAAATTTTAAATGTTTATATGTTTTGCTTGCATGTACGTCTGTGTGCCACTTGCATGCCTGGTACCCTCAGAGGCCAGAAAGGTTATCAGTCCCCTGATACTGAAGTTATAAATGTGTATGAATTTTCATATGGGTGCTGGGAATCAAACCTACATTCTCTGGAGTAGTGATCAGTGCTCTCGAATACTGAATTCACCTCTTTAGTCTCTAATTTTTTTTTAAACGAGCAAAGATACTTTAATATGTTCTGTAAAATTATCATCTAATTTGTGTCAAAAATAAAGATGTGATAAAGAAATATGTTAATGAAAATTTATTATTAGGTATTCATGAAAGTGCACTAAGAGAATTATTGTTATACTGTGAATTTGATGATATTAATTTTTCCTTCCAG
Seq C2 exon
GCGTCTTTTCTGGACCTTGCCTTCCCAATTGGATCATGCATGCCAAGAGCTGTTATCTATTTAGCTTCTCAGAAAATTCCTGGTATGGAAGTAGGAGACACTGTTCCCAGCTAGGAGCTCATCTATTGAAGATAGACAATGCAAAAGAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054251:ENSRNOT00000077793:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=PU(90.3=82.4)
A:
NA
C2:
PF083915=Ly49=PD(6.5=3.9),PF0005916=Lectin_C=PU(25.2=52.9)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]