HsaINT0036279 @ hg19
Intron Retention
Gene
ENSG00000172243 | CLEC7A
Description
C-type lectin domain family 7, member A [Source:HGNC Symbol;Acc:14558]
Coordinates
chr12:10277896-10280444:-
Coord C1 exon
chr12:10280346-10280444
Coord A exon
chr12:10278048-10280345
Coord C2 exon
chr12:10277896-10278047
Length
2298 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TACTAATCTTTTATTTCCAGGGG
3' ss Score
7.73
Exon sequences
Seq C1 exon
GATCGTGTGCTGCATCTCCTCCTTGGCGCCTCATTGCTGTAATTTTGGGAATCCTATGCTTGGTAATACTGGTGATAGCTGTGGTCCTGGGTACCATGG
Seq A exon
GTGAGTATTTGGTGGAGGAGATTAACAACAGACAATTTAGTAAGCAATTATTATGTGCCAGGCACTCTTTTAAGGGCTTGACATGCATAATCTACTTTAATTTGTATATAATCTGGTTTTATCTGTATTGGGTTGGTGCTGTTAATGCCCATTTCACTTATAAAGGGTGTGAGAGACTGAGAGGTTATTTTACCTTTCCAGGGTTATAAGCTAGTTAGTGGTGGGACCATGATTAGAAATTTGGGTGATCTGTCTAAAAAACTCATACTCTTAACTACATTGCTCTCCTACCTCCCTTACATAGCTGGTTTCAAAGCTGTGGAATTCAAAGGATAAATTAATGAAGAAAACAAGCGGAGCTGAAGAAGAAAGTACAATATGGTGCTGTCTTCCTAATGAAATAAATTCACTAAATGGACATTAAGCTATTTTTATGATTCACATTATTTAAGGAAATTATTTCCGATCTTTAATATAAACACCTTTGAATACACCAGAAATTTCCTGAGGCACTTGGTCTTAAGTCGATATTTTGTAATGGATTAATATTTTTTTTACATTTTATATCACATGCAATCTGTTGTCAGTCACCTTCAGAGAGTCTTCATGACATTCCTTAATTAGTCAAATGTTTATTGAGTGCGTTCTATGTTATAGGTACTGGGCAGTTTCTCAAGGATCTCTCATTTTTAAATAACAGAAGAAAGGTGAAAGATGTTGCTATTTCAAATCTGTCATGGGTCCAATTGACTCTATGACATTTGCCTCTTGCTGCCTCCCTCATTCTATTTCTTCTTCTCCACCTTCTTTTTTCTTTTCTTTTTTTTTTTTTACTATACCTCCTTTATAAAAGTTATGTATTTCTTTTCATCTATTCTATCAATCGTCTTTATCTCTCCACAGCAATATATCATCTATTTATCATTAATCAATAATGTATTCTTTTATTCCAATAACATTTGGGTTTTGGGATTTTAATTTTCAAACACAGCAGAATGACATTTTTTCTGTCACTATTATTATTGTTGGTATGTGAAGCTATTTGGAGATCCAATTCAGGAAGCAACACATTGGAGAATGGCTACTTTCTATCAAGAAATAAAGAGAACCACAGTCAACCCACACAATCATCTTTAGAAGACAGTGTGACTCCTACCAAAGCTGTCAAAACCACAGGCAAGGGCATAGTTAAAGGACGGAATCTTGACTCAAGAGGGTTAATTCTTGGTGCTGAAGCCTGGGGCAGGGGTGTAAAGAAAAACACTTAGATTCAATGATTGTAAATTTAAGGCAAATACACATATTAGTATTACCTTAGTGTAATGTATCCCTGTCATATATACAATAAGGTGAAATTATAAGTACCCTATGCAGTTGGCTGGACAGTTCTAAATTGGACTTTATTAATTTTTAAAATCAGTAACTGATTTATCACTGGCTATGTGCTTAGATCTACAGGAGATCATATAATTTGATACAAATAAAAGAAAAGTGTTCTCTCCCCTTACAGAATTGACATTTTAAATGCGATACAGTTAGAATAGGAAATATGACATTAGAAAGGAAGAATGACAGGGAGAAAGGAAAGAAGGGAAAATGTTGCCAAGAATAAGGAAGCTATATTAAAAATATACAAAAGAGGTAGACCTAATACACATGTCCCTGAAAACTCATCAAATTTGTTTAATCATACAATTTCATTTACTTAATTACAATTCTATACACACTTGACTTTTACTTCTAATTGCATCATAATTGACTATGACTTAATGTTTTCAGTTCAATTTTTCATCTCTGGACCCATACCTTCTCACTATTTTTATTAAGTAGCTAATAATATATAACAGAGATAGTGTATAATATGAATAATTGGCCTATACTTTTCTCACTTGGAAAGTCACATTATGAAGTAGATCTTACATCATAAAATAAGTAGCAATATGAAATTGCTGTGTACCTCAATGACTGATTGTGAGTGGACTTATTTTAAGGAGTTATTAAGGAGAAAGGTAGTTTTGAGCTGAATTAGAAGGAATAGAAGACAAGTGAAGAAAAAAAGGATGGTTGGCTGCCTAAAATACTATTTATAGCTAGTTTGTTTTTAAATTTTAAATGAATAGGAAGATTTTAATGTATTCTCATCTGTAAAATCATATCCCTGTAGTTCGAATTGACAATGAAATATAAAAATGGCAACTAATTGGTTATTTCATAAGTGTCCTTAAGATGAATGGTGTTCACACTAAAAGAGTGAATTGGTATGCTATGAACCTCATGGTACTAATCTTTTATTTCCAG
Seq C2 exon
GGGTTCTTTCCAGCCCTTGTCCTCCTAATTGGATTATATATGAGAAGAGCTGTTATCTATTCAGCATGTCACTAAATTCCTGGGATGGAAGTAAAAGACAATGCTGGCAACTGGGCTCTAATCTCCTAAAGATAGACAGCTCAAATGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172243-CLEC7A:NM_022570:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139031=Claudin_2=FE(38.8=100),PF0033515=Tetraspannin=FE(24.6=100),PF0769011=MFS_1=FE(28.9=100),PF083915=Ly49=PU(36.8=82.4),PF059667=Chordopox_A33R=PU(20.5=73.5)
A:
NA
C2:
PF0033515=Tetraspannin=PD(35.1=92.2),PF0769011=MFS_1=PD(25.4=56.9),PF083915=Ly49=PD(1.3=2.0),PF059667=Chordopox_A33R=FE(41.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)