HsaEX0016160 @ hg38
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr2:164743687-164841246:-
Coord C1 exon
chr2:164841156-164841246
Coord A exon
chr2:164779655-164779785
Coord C2 exon
chr2:164743687-164743875
Length
131 bp
Sequences
Splice sites
3' ss Seq
AGTCTTCTCTTTCCCTCTAGGCT
3' ss Score
11.04
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
CAGTGACGCGCCGCCTGGGAGCTGGAGCCCGCGCAGCGCCCCGCAGGGCGATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAG
Seq A exon
GCTCAGTTATTGGGACAGAGGCTGATGAAGAAAGACCTGAAGGAAGGCCCTAGTCTGTGTGGTCTCTGTTTGGAGGAGCTAAAAGGGGACTTTTTGGTCGAGAGACTCAGAGAGAATATCCCTGCCGTAAG
Seq C2 exon
GAGAAAACCAAAAGCCAAGGCACCACTTCCTCCAGCTGAGACCAAATATACTGATGTCTCTTCAGCTGCTGATTCTGTAGAATCCACTGCTTTCATCATGGAACAGAAAGAAAACATGATAGATAAAGACGTTGAACTCTCAGTGGTCCTACCTGGGGATATTATCAAATCTACTACTGTTCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438_MULTIEX1-3/10=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=0.997 A=0.205 C2=0.352
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGACGGCCGAACCCC
R:
TGCCATGAACAGTAGTAGATTTGA
Band lengths:
230-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development