HsaEX1009265 @ hg38
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr2:164779655-164800554:-
Coord C1 exon
chr2:164800534-164800554
Coord A exon
chr2:164797969-164798050
Coord C2 exon
chr2:164779655-164779785
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGTTGGCCACTTTGTTTCAGGTT
3' ss Score
8.92
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGAGAGATTGCTGGGTCATG
Seq A exon
GTTTGTTTTAGGTATGCCAAGCACAAGCCAGTATAACCATGGATTTCTGAACCAATCTCCTGTAATAATTGATCTTTTCAAT
Seq C2 exon
GCTCAGTTATTGGGACAGAGGCTGATGAAGAAAGACCTGAAGGAAGGCCCTAGTCTGTGTGGTCTCTGTTTGGAGGAGCTAAAAGGGGACTTTTTGGTCGAGAGACTCAGAGAGAATATCCCTGCCGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438-'15-24,'15-23,16-24
Average complexity
C3
Mappability confidence:
88%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.214 C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000629362fB12694
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGATTGCTGGGTCATG
R:
CTTACGGCAGGGATATTCTCTCT
Band lengths:
152-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains