HsaEX0018271 @ hg19
Exon Skipping
Gene
ENSG00000197408 | CYP2B6
Description
cytochrome P450, family 2, subfamily B, polypeptide 6 [Source:HGNC Symbol;Acc:2615]
Coordinates
chr19:41510202-41518390:+
Coord C1 exon
chr19:41510202-41510351
Coord A exon
chr19:41515124-41515300
Coord C2 exon
chr19:41518203-41518390
Length
177 bp
Sequences
Splice sites
3' ss Seq
CCACCCCTTCTTTCTTGCAGCTG
3' ss Score
11.24
5' ss Seq
AAAGTGGGG
5' ss Score
-1.01
Exon sequences
Seq C1 exon
GTGTGATCTTTGCCAATGGAAACCGCTGGAAGGTGCTTCGGCGATTCTCTGTGACCACTATGAGGGACTTCGGGATGGGAAAGCGGAGTGTGGAGGAGCGGATTCAGGAGGAGGCTCAGTGTCTGATAGAGGAGCTTCGGAAATCCAAGG
Seq A exon
CTGTTTGAGCTCTTCTCTGGCTTCTTGAAATACTTTCCTGGGGCACACAGGCAAGTTTACAAAAACCTGCAGGAAATCAATGCTTACATTGGCCACAGTGTGGAGAAGCACCGTGAAACCCTGGACCCCAGCGCCCCCAAGGACCTCATCGACACCTACCTGCTCCACATGGAAAAA
Seq C2 exon
AGAGAGTCTACAGGGAGATTGAACAGGTGATTGGCCCACATCGCCCTCCAGAGCTTCATGACCGAGCCAAAATGCCATACACAGAGGCAGTCATCTATGAGATTCAGAGATTTTCCGACCTTCTCCCCATGGGTGTGCCCCACATTGTCACCCAACACACCAGCTTCCGAGGGTACATCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197408_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(45.0=100),PF0006717=p450=PU(1.8=5.9)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=PD(0.9=1.6),PF0006717=p450=FE(36.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTATGAGGGACTTCGGG
R:
TGTGTTGGGTGACAATGTGGG
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)