DreEX6045084 @ danRer10
Exon Skipping
Gene
ENSDARG00000022650 | cyp2ad3
Description
cytochrome P450, family 2, subfamily AD, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-041001-156]
Coordinates
chr20:25650155-25651552:-
Coord C1 exon
chr20:25651395-25651552
Coord A exon
chr20:25651115-25651291
Coord C2 exon
chr20:25650155-25650658
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATTGTGTCATGTCTTACAGCTG
3' ss Score
9.84
5' ss Seq
AGGGTAACT
5' ss Score
5.8
Exon sequences
Seq C1 exon
GACCTGTCGACCCCATGGTCACCTTAAACAGTGCAATCTCGAATATCATTTCCAGCTTGATATTTGGACAACGCTTTGACTATCATGATGAATATTACCAAAGAATTCTGCGTCTCGACACTGAATGCATTCAGTTAGCAGGTTCTCCTAGGGCACAG
Seq A exon
CTGTATAATGCATGTCCTTGGCTCTTTGAATATTTACCCGGCCCTCACCAGACAATTTTTTCCAACTATAAGAAGATCAAAGACTTCCTGAGAGGGGAGATTATTAAGCACAGAGAGGACTGGGACCCTGCAAACCCACGTGACTTTATAGACAACTACCTGACTGAGATGGAAAGG
Seq C2 exon
AAAAAGAGTGACCCTGAAGCTGGTTTTAACATAGAGGGGTTAGTGGTTACTTGTCTGGACCTGATTGAAGCCGGGACAGAGACTGCAACTACAACCTTACGCTGGGGTCTGCTTTTTATGATCAAGTTTCCAGAAATACAAGGTGAGTATGCAGATCTTCATTTGAAGCAGGATGGAAATTTAACAAGAACTGCAAGTCATCTACAAGTGAAATGAAATGTCATCTGCAAGTTAGCTAGGGAATGCATCATGCCCAGGCATTTTCCATATCTTACAACACAGAATACAGAAATAATATTTGTGTTTCATCTTTCAGAAAAGGTCCAGGCAGAGATAGACAGGGTGATTGGACAGTCACGTCAACCCTGCTTGAATGACAGAGTTAATATGCCCTATACTGAAGCTGTGATTCATGAGATTCAAAGATTTGGGGATGTTGTTCCACTGGGATTCCCTAAACGGGCTGTTAAAGACACACAACTAGGGAAATATTTCATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022650-'6-10,'6-6,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCATGGTCACCTTAAACAG
R:
TGTAGTTGCAGTCTCTGTCCC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]