HsaEX0018293 @ hg19
Exon Skipping
Gene
ENSG00000186104 | CYP2R1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:HGNC Symbol;Acc:20580]
Coordinates
chr11:14907322-14912015:-
Coord C1 exon
chr11:14911978-14912015
Coord A exon
chr11:14909176-14909375
Coord C2 exon
chr11:14907322-14907463
Length
200 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTTTATATTCTGAAGGTA
3' ss Score
6.2
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
Exon sequences
Seq C1 exon
TTTACGTTGTTAAAGGGAAGCTGGACGAGATAATAAAG
Seq A exon
GTAGAAACAGCATAACTGCTGAGCAGTTGGATGTGGAGTTTGGAAGAAGATAATGAGTCAGTGTGGGTGACTGCAAAGTCCTGGGCCTCAACCACTTGAAGGATGTATGGAGTGGTCATTAACTGGGAGAGTGAAAAATTATGAGTAGGGCTGGTTTGGGTGAGGGAAAGAGACTTGAAGATCATGGAGTGATCTAGAAG
Seq C2 exon
ATCTTCAGTTTAGATCTTGGAGGCATATCAACTGTGGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGCGAAATTTTTGCAGACAGACCATGCCTTCCTTTATTCATGAAGATGACAAAAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186104_MULTIEX1-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(19.6=81.8)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACGTTGTTAAAGGGAAGCTGGA
R:
CTCCCATTTTTGTCATCTTCATGA
Band lengths:
180-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)