HsaEX0018293 @ hg38
Exon Skipping
Gene
ENSG00000186104 | CYP2R1
Description
cytochrome P450 family 2 subfamily R member 1 [Source:HGNC Symbol;Acc:HGNC:20580]
Coordinates
chr11:14885776-14890469:-
Coord C1 exon
chr11:14890432-14890469
Coord A exon
chr11:14887630-14887829
Coord C2 exon
chr11:14885776-14885917
Length
200 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTTTATATTCTGAAGGTA
3' ss Score
6.2
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
Exon sequences
Seq C1 exon
TTTACGTTGTTAAAGGGAAGCTGGACGAGATAATAAAG
Seq A exon
GTAGAAACAGCATAACTGCTGAGCAGTTGGATGTGGAGTTTGGAAGAAGATAATGAGTCAGTGTGGGTGACTGCAAAGTCCTGGGCCTCAACCACTTGAAGGATGTATGGAGTGGTCATTAACTGGGAGAGTGAAAAATTATGAGTAGGGCTGGTTTGGGTGAGGGAAAGAGACTTGAAGATCATGGAGTGATCTAGAAG
Seq C2 exon
ATCTTCAGTTTAGATCTTGGAGGCATATCAACTGTGGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGCGAAATTTTTGCAGACAGACCATGCCTTCCTTTATTCATGAAGATGACAAAAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186104_MULTIEX1-3/6=2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACGTTGTTAAAGGGAAGCTGGA
R:
CTCCCATTTTTGTCATCTTCATGA
Band lengths:
180-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development