HsaEX0018294 @ hg38
Exon Skipping
Gene
ENSG00000186104 | CYP2R1
Description
cytochrome P450 family 2 subfamily R member 1 [Source:HGNC Symbol;Acc:HGNC:20580]
Coordinates
chr11:14880136-14890469:-
Coord C1 exon
chr11:14890432-14890469
Coord A exon
chr11:14885776-14885917
Coord C2 exon
chr11:14880136-14880768
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTCTCTTCTCAAAGATC
3' ss Score
8.8
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
TTTACGTTGTTAAAGGGAAGCTGGACGAGATAATAAAG
Seq A exon
ATCTTCAGTTTAGATCTTGGAGGCATATCAACTGTGGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGCGAAATTTTTGCAGACAGACCATGCCTTCCTTTATTCATGAAGATGACAAAAATGGGAG
Seq C2 exon
GCTTACTCAATTCCAGATATGGCCGAGGATGGGTTGATCACAGACGATTAGCTGTAAACAGTTTTCGATATTTTGGATATGGCCAAAAGTCTTTTGAATCTAAAATCTTGGAAGAAACCAAATTTTTCAATGATGCTATTGAAACATACAAAGGTAGACCTTTTGACTTTAAACAGTTAATAACGAATGCTGTTTCAAACATAACCAATCTGATCATTTTTGGAGAACGATTCACTTATGAAGACACCGATTTTCAGCACATGATTGAGTTATTTAGTGAAAATGTGGAACTAGCTGCCAGTGCCTCAGTCTTCTTGTATAATGCCTTTCCATGGATTGGCATCCTGCCTTTTGGAAAACATCAACAGCTGTTTAGAAATGCAGCTGTAGTCTATGATTTTCTCTCCAGACTCATTGAAAAAGCTTCAGTCAACAGAAAGCCTCAGCTACCTCAGCATTTTGTTGATGCTTATTTAGATGAGATGGATCAAGGTAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186104_MULTIEX1-4/6=2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.040
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(46.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTGTTAAAGGGAAGCTGGA
R:
TGGTTATGTTTGAAACAGCATTCGT
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development