BtaEX0010592 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010419 | CYP2R1
Description
Bos taurus cytochrome P450, family 2, subfamily R, polypeptide 1 (CYP2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076267]
Coordinates
chr15:38420926-38440249:+
Coord C1 exon
chr15:38420926-38421177
Coord A exon
chr15:38429166-38429307
Coord C2 exon
chr15:38439617-38440249
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTCTTCTCAAAGATC
3' ss Score
8.95
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GCGGGTTTGCAGCCCCCGCCCCAGGCCATGTGGGAGCCTCACAGCGCCGAGGCGTTCGTGGCAGCCCTCGGCGGGGTCTTCTTCCTGCTTCTCTTCGCCCTGGGGGTCCGCCAGCTGCTGAAGCAGAGACGGCCGTCGGGCTTCCCCCCGGGACCGTCGGGGCTGCCATTTATCGGCAACATCTACTCACTGGCCGCCTCGGCCGAACTCCCCCATGTCTACATGAAAAAACAGAGCCAGGTGTACGGCGAG
Seq A exon
ATCTTCAGTTTGGATCTTGGAGGTATATCAGCTGTGGTTCTAAATGGCTATGATGTAGTAAAGGAATGCCTTGTTCATCAAAGTGAAATTTTTGCAGACAGACCATGTCTTCCTTTATTCATGAAGATGACAAAAATGGGAG
Seq C2 exon
GCTTACTGAATTCCAGATATGGCCGAGGATGGGTTGATCACAGAAAATTAGCTGTAAATAGCTTTCGCTGTTTTGGATATGGCCAGAAATCTTTTGAATCTAAAATCTTAGAAGAAACCAAATTTTTCATTGATGCTGTTGAAACATACAATGGTAGCCCTTTTGACTTAAAACAATTAGTAACAAATGCTGTTTCAAACATAACCAATCTGGTCATTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAGTTATTTAGTGAAAATGTGGAACTAGCTGCCAGCGCCACAGTCTTCCTCTATAATGCCTTTCCATGGATTGGCATCTTACCTTTTGGAAAACATCAACAACTGTTTAGAAATGCAGCCGTGGTCTATGACTTTCTGTCTAGGCTTATTGAAAAAGCTTCCATCAACAGAAAACCTCAGTTACCTCAGCATTTTGTTGATGCTTATTTAGATGAGATGGAAAGAAGTAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010419_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.6=41.7)
A:
PF0006717=p450=FE(55.3=100),PF0006717=p450=PU(6.8=25.0)
C2:
PF0006717=p450=FE(46.0=100)
Main Inclusion Isoform:
ENSBTAT00000013747fB2007
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGCTTCTCTTCGCCC
R:
TGGCCATATCCAAAACAGCGA
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development