GgaEX6037017 @ galGal4
Exon Skipping
Gene
ENSGALG00000006050 | CYP2R1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20580]
Coordinates
chr5:9967705-9973139:-
Coord C1 exon
chr5:9972480-9973139
Coord A exon
chr5:9969953-9970094
Coord C2 exon
chr5:9967705-9968337
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTCCCTTAAAGATT
3' ss Score
9.8
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGACCCGAGAAGGCTGCGGGAAAGACATCCCCAAAAGTGCGTATTTCTGCTTTTTCTGTTTTTCCAGGACTACGAACGAAGGTATTTTTAATCAGGCGGCACAAGCTTCTCAGCTCTTCACCAGCACAGCCCCGGCCCGCCCCGGCCCGCTGACGCGAGGGGCGGCGCTCCCGTGGACCGATCGACGCGGGGCGGCTCTGCCAGCGCCCAACGGGGGGGCGGCGGGACGGGGCCGGGCGGCAGGAGGAAGCGGCGCGATGGGGCCGGCGGCGGGGGACGCGGAGCCGGAGGCAGCGGCGGGGGGCGGTCCCTGGCTGCTGCTGGCGCTGCCGCCGCTGCTGCTGCTGTTCGCGCTGGTGGTTCGGCAGCTGTTGAAGCAGCGGCGGCCGCCCGGCTTCCCGCCCGGCCCCGCGGGGCTGCCCCTCATCGGCAACATCCACTCCCTGGGCGCGGAGCAGCCGCACGTCTACATGCGGCGCCAGAGCCAGATCCACGGGCAG
Seq A exon
ATTTTCAGCCTTGATTTGGGAGGTATATCTGCTATTGTGCTGAATGGCTATGATGCAGTGAAAGAATGCCTTGTTCACCAAAGCGAAATTTTTGCAGACAGACCATCTCTTCCTTTGTTTAAGAAGCTGACAAACATGGGAG
Seq C2 exon
GCTTACTAAACAGCAAATATGGCAGAGGATGGACAGAACATCGCAAATTAGCTGTGAACACCTTTCGAACTTTTGGATATGGTCAAAGGTCCTTTGAACACAAAATTTCAGAAGAATCTGTGTTTTTCCTCGATGCCATTGATACCTACAAAGGCAGACCATTTGATCTTAAGCACTTGATAACAAATGCTGTTTCAAACATTACTAATTTGATTATTTTTGGAGAACGTTTTACATATGAAGATACTGAATTTCAGCACATGATTGAGATTTTCAGTGAAAATATTGAATTAGCTGCTAGTGCCTCTGTATTTTTATATAATGCTTTTCCTTGGATTGGTATCTTGCCATTTGGGAAACACCAGCAGCTGTTTAAAAATGCAGCTGAAGTCTATGACTTTCTTCATAAGCTTATAGAACGAGTCTCTGAAAATAGGAAATCCCAGTCACCTCGACACTTTATAGATGCATACTTAGATGAGATGGATTGCAACAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006050-'2-3,'2-2,6-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.2=15.0)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(46.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCGGCAACATCCACTCC
R:
TCAAATGGTCTGCCTTTGTAGGT
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]